Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2877 ATGGGAAATGGAGAGTCAGCACATGATTCTCATGATGATATTTTCCGGCAACAACCCCCTTCCTGTGATGGAAGTTCAGCGAATACTAGCTATCAACATCATGCATCCTCTTCACACGCTGGGAGTTCAGTGAATACCAGACATCAACATAAGCAGCGACCCACATATATAGCTGACAATTTTAGTTCATTGGATCAGGTTGTTTCTGCTTTGAGAGAAGCTGGTCTGGAATCTTCAAATCTAATAATTGGAATTGACTTCACCAAAAGCAATGAGTGGACAGGCAAGCACTCCTTCAACCGCAAAAGCCTTCATTCTATTGGAAACACTCCAAATCCATATGAGCAAGCAATCTCTATAATTGGCCGTACTCTCTCTTCATTTGACGAAGACAATCTGATACCATGTTTTGGATTTGGTGATGCATCTACACATGATCAGAATGTGTTCAGCTTTTATCCTGATGATTGCTATTGTCATGGTTTTGAGGAAGTACTTGCACGCTACCGAGAGATTGTGCCTCACTTAAAATTGGCAGGTCCAACATCATTTGCCCCTGTAATCGACGCAGCAGTTGACATTGTGAAAAAAAACAACGGTCAATATCATGTTCTTGTCATTATTGCTGATGGACAGgttACTAGAAATTCAGATACACCACATGGAAAGTATAGTCCACAAGAACAAGCGACTATTAATTCTATCATTGCTGCAAGTCACTATCCCCTCtcaattattttggttggaGTTGGAGATGGACCGTGGGATGAAATGCAGCACTTTGATGATAGCATTACTCAGCGCTTATTTGACAACTTTCAGTTTGTGAATTTCACAAAGATCATGTCTGAGAACAAAGATGCATCAAAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTACCGGATAACCCAAAATCTACAAGTTGCCGATGTAAAATCATGTTACCAATCTAAAAGGCCTCTTCCTCCCCCTAAGGAAGTATTAGATCGTGACAATGCAGTCCGAGCAGTTCCACATGGGACAAATTTTGAATCAGTTGAGCCGACAGCTCCAGCTGCAGTAGAATCAGTATGCCCTATTTGTTTAACCAATCCGAAGGACATGGCTTTTGGATGTGGTCATACAACTTGCAAGGAGTGTTGCGCGACATTATCTTCATGCCCTATGTGCCGGCAGCAAATTACAACTCGCTTGAGACTATACACTTGA 1230 0.413 MGNGESAHDSHDDIFRQQPPSCDGSSANTSYQHHASSSHAGSSVNTRHQHKQRPTYIADNFSSLDQVVSALREAGLESSNLIIGIDFTKSNEWTGKHSFNRKSLHSIGNTPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDASTHDQNVFSFYPDDCYCHGFEEVLARYREIVPHLKLAGPTSFAPVIDAAVDIVKKNNGQYHVLVIIADGQVTRNSDTPHGKYSPQEQATINSIIAASHYPLSIILVGVGDGPWDEMQHFDDSITQRLFDNFQFVNFTKIMSENKDASKKEAAFALAALMEIPIQYRITQNLQVADVKSCYQSKRPLPPPKEVLDRDNAVRAVPHGTNFESVEPTAPAAVESVCPICLTNPKDMAFGCGHTTCKECCATLSSCPMCRQQITTRLRLYT 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2877 409 SUPERFAMILY RING/U-box 359 404 - -
Ssu5g2877 409 Pfam Zinc finger, C3HC4 type (RING finger) 363 403 - -
Ssu5g2877 409 PANTHER COPINE FAMILY PROTEIN 1 36 408 - -
Ssu5g2877 409 CDD vWA_copine_like 57 307 IPR010734 -
Ssu5g2877 409 MobiDBLite consensus disorder prediction 1 16 - -
Ssu5g2877 409 Gene3D von Willebrand factor, type A domain 104 284 IPR036465 -
Ssu5g2877 409 SMART ring_2 365 397 IPR001841 -
Ssu5g2877 409 SUPERFAMILY vWA-like 79 262 IPR036465 -
Ssu5g2877 409 MobiDBLite consensus disorder prediction 19 53 - -
Ssu5g2877 409 Pfam Copine 103 314 IPR010734 -
Ssu5g2877 409 SMART VWA_4 78 281 IPR002035 -
Ssu5g2877 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 353 409 IPR013083 -
Ssu5g2877 409 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG3 36 408 - -
Ssu5g2877 409 MobiDBLite consensus disorder prediction 1 53 - -
Ssu5g2877 409 CDD RING-HC_RGLG_plant 364 408 IPR045317 GO:0061630|GO:0070534
Ssu5g2877 409 ProSiteProfiles Zinc finger RING-type profile. 365 398 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2877 Ssu-Chr5 75233280 75240598 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2877 K16280 - gmx:100791316 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2877 5 75233280 75240598 Ssu5g2877 5 75233280 75240598 ECH