Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2870 ATGCACCTTCACAAACTTCCTCGTTCTCCTTCTTCCTTCGGGAATGCGTTCTTTCTGGTGGGTCATCGTGTTTTGGACATAAGAGCGTGTAATAATAGTTTATTCCGTAAGAATCGGAGATGTTTCGGAACGTCCATTGCGCGCTCTGGCGGTGTTAGAAACGATTCTTTTGTGCCTTCTATTGAGCAACTAAGTGATGCTCGGGTTATATACTCTGTCGCTCCATCTATGGGCCACAACCAGGAGTCTCATCCAGAATCACATTTTAGAGTTCCTGCGATTGTGAATGCTCTAGAAGAAATGCAGCTCACTTCGAAGTTCCGTGGTTTTGAGGTAATTGAACTTCAACATTTTGAGCCTGCTTCAGTAGATGATATTGCAAGTGTGCATGCAAGAGCCTATGTTTCTGGCCTTGAAAagGTTATGGATCAAGCTGTGGAGAAGGGCCTTATTTTCATTGATGGTTCTGGACCAACATATGCCACTGCCACGACCTTCCAGGAGTCAATAATTGCAGCTGGTGCTGGATTAGCCTTAGTTGACTCAGTGGTTGCAGGTTCAAAGATAAAGAGAGATGCACCCACTGGTTTTGCTCTGATAAGACCGCCAGGACATCACGCTGTTCCACAAGGACCTATGGGCTTCTGCATTTTTGGAAATGTGGCCATTGCTGCCCGTTACGCTCAGCGTGTTCATGGACTGAAGCGTGTGTTTATAATTGACTTTGATGTTCATCATGGAAATGGAACAAATGATGCTTTCTATGATGATCCTGAtgtatttttcctttcatttcatCAAGATGGAAGCTATCCAGGTACTGGTAAATTTGATGAGGTGGGTAGTGGAGATGGTGAAGGAACCACACTAAATCTGCCACTTCCTGGAGGCTCAGGTGATACTGCTATTAGAACCGTGTTCGATGAAGTCATTGCACCATGTGCTCAAATATTTAAGCCAGACATCATTCTTGTCTCTGCTGGGTATGACGGCCACGTGTTGGATCCGCTAGCTAATCTTCAATATACAACTGGAACATATTACATGCTAGCGTCCAGTATTAAACAGCTAGCAAAAGATTTATGTGGGGGCCGatgtgtgtttttcttggagGGAGGATATAATCTGAAGTCTCTTTCATATTCCGTAGCGGACACGTTCCGTGCACTTCTTGGGGATCCAAGCTTGGCATCTGAGTTTGATGACCCTAACATTTTGTATGAAGAGCCATCAACAAAAGTTAAGCAAGCTATTCAGAGGATAAAACACATTCATTCCCTGTGA 1284 0.4307 MHLHKLPRSPSSFGNAFFLVGHRVLDIRACNNSLFRKNRRCFGTSIARSGGVRNDSFVPSIEQLSDARVIYSVAPSMGHNQESHPESHFRVPAIVNALEEMQLTSKFRGFEVIELQHFEPASVDDIASVHARAYVSGLEKVMDQAVEKGLIFIDGSGPTYATATTFQESIIAAGAGLALVDSVVAGSKIKRDAPTGFALIRPPGHHAVPQGPMGFCIFGNVAIAARYAQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDVFFLSFHQDGSYPGTGKFDEVGSGDGEGTTLNLPLPGGSGDTAIRTVFDEVIAPCAQIFKPDIILVSAGYDGHVLDPLANLQYTTGTYYMLASSIKQLAKDLCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDPSLASEFDDPNILYEEPSTKVKQAIQRIKHIHSL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2870 427 SUPERFAMILY Arginase/deacetylase 80 395 IPR023696 -
Ssu5g2870 427 CDD HDAC_classII 84 391 - -
Ssu5g2870 427 PANTHER HISTONE DEACETYLASE 14 39 426 - -
Ssu5g2870 427 PRINTS Histone deacetylase superfamily signature 236 251 IPR000286 -
Ssu5g2870 427 PRINTS Histone deacetylase superfamily signature 320 330 IPR000286 -
Ssu5g2870 427 PRINTS Histone deacetylase superfamily signature 202 225 IPR000286 -
Ssu5g2870 427 PANTHER HISTONE DEACETYLASE 39 426 - -
Ssu5g2870 427 Pfam Histone deacetylase domain 84 389 IPR023801 -
Ssu5g2870 427 Gene3D Histone deacetylase domain 58 426 IPR037138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2870 Ssu-Chr5 75088310 75099310 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2870 - - gmx:100788664 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2870 5 75088310 75099310 Ssu5g2870 5 75088310 75099310 ECH