Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2856 ATGGAGGTAGAGTACCCCTTATTGCCAGAGAAACCGGTATTAGCCGAACCATGCATAGCTGAAAGCCAGGACAAAACCAACAACGAGGTCGGAGTGTTATCCAAAACAAGCACCTCAGAAACATCTCATGACTTTTGCAACCACTCTGAGTCCTTCAAGAAGCTCGTAGAGATGGGCCTGCCGTATAATGAGTCAGTGGAGGAAAAACTGTCTTGGTTGCGGTCCCAAATCATAGGTAACGATGCAGAGTTCGACTCTCCATTTGGAAAACGAAAAGTTGTCTATGCTGATCACACTGCTTCAGGCCGCAGCCTCCACTACAACGAAAATTTCATCATCAATCACCTTCTTCCTTTCTATGGTAACACGCACACGTGCGACAGTTACGTGGGAAGCAGGACAACAAAAATGGTACACGAAGCAAGTGAGTACATTAAAAAATGCTTAGGTGGTGGGGAAGACGATGCGCTTATATTATGTGGCTCGGGCACAACTGCAGCTGTCAAGAGGCTGCAAGAAGTGATGGGAATCGCTGTGCCATCTTTTCTGAGGGAAAGGgttttaaaaagcctaagcaCAGAAGAAAGATGGGTGGTTTTTATTGGACCGCATGAACACCATTCAAATCTCCTTTCTTGGAGGCAAAGTTTGGCTGAGGTGGTAGAGATTGGTCTTGATGACAAAGGGTTGCTTGACATGGATGCTCTAAAGCTACAACTTGAGGGCTACAAAGATACCAATCGACCCATGTTGGGATCTTTCTCAGCTTGTAGCAATGTCACGGGAATATACTCAGATACACGTGCAGTTGCTCAGCTTCTTCATCAGTACAAAGCCTTTGCATGCTTTGATTTCGCAGCCAGtGGTCCATACGTGGAGATTGCCATGAGATCAGGGGAGAATGATGGGTATGATGCTGTGTTCCTCAGTCCGCATAAGTTTCTTGGTGGTCCTGACTCTCCTGGGGTGCTCCTCATGAACAAGGCACTGTACCTGCTAGGATCTTCACCACCGTCCACTTGTGGAGGTGGAACCGTGACTTATGTCAATGGCTTCAATGAACAGGATACATTATACTTGGAGGACATAGAGGAAAGGGAAACAGGGGGCACGCCTCCTATAATCCAGACAGTCAGAGCAGCATTGGCATTTTGGGTGAAAGAATATATAAGTTGTGAAGAGATTGAAAAACGGGAACAACTGTACATTAACAAGGCACTTGAGAGGCTTGGCTCAAACCCCAACATTGAGGTTCTAGGAAACTTGAAGGCCAAGAGACAAGCTATATTGTCATTTCTGATATACTCTACCACCAATTCTTCCTCAGCTGGTGAGTGGAGTGATGGTAACCAAGAAAATGAAGGGGAACTTGATTTGTGGGCAGAAACGGGGAACCAAAGAGGTAAGCCACTTCATGGCCCTTTTGTTGCAGCACTGCTCAATGACCTCTTTGGCATCCAAGCTCGAGGTGGGTGTGCTTGTGCTGGACCTTATGGCCACGAATTGCTCCACATCAACAAGTTTCAATCACTAGCCATTAGATCAGCAGTTCAAGAGGGCTATATTGGAGCAAAGCCAGGGTGGACCCGAGTTAGTTTTCCTTACTATATGAGTGAAGAGGATTTTGAGTACATTCTGAAAGCCATAGAGTTTTTAGCTGTATATGGCCAACGATTCTTTCCTCTTTATagctttaatttgataaatggCAGCTGGAGATTGAAGACAGAGAAAATTGAGGCACTAACCAAGGAAGGCAATTGCAACTTTCCTAGTCATAATATTGGAGTTAAACAAGGTGGGGTTATGAGAAGGGATGAATCATACTTTGAGGCAGCTAAATGTATTGCTAGTACCCTCCCCAAATTCCCTTCTCAGGGTATACTCCAGGAGGACGTGGATCCCAATATCTTCTGCTTTAGAGTTTGA 1929 0.4474 MEVEYPLLPEKPVLAEPCIAESQDKTNNEVGVLSKTSTSETSHDFCNHSESFKKLVEMGLPYNESVEEKLSWLRSQIIGNDAEFDSPFGKRKVVYADHTASGRSLHYNENFIINHLLPFYGNTHTCDSYVGSRTTKMVHEASEYIKKCLGGGEDDALILCGSGTTAAVKRLQEVMGIAVPSFLRERVLKSLSTEERWVVFIGPHEHHSNLLSWRQSLAEVVEIGLDDKGLLDMDALKLQLEGYKDTNRPMLGSFSACSNVTGIYSDTRAVAQLLHQYKAFACFDFAASGPYVEIAMRSGENDGYDAVFLSPHKFLGGPDSPGVLLMNKALYLLGSSPPSTCGGGTVTYVNGFNEQDTLYLEDIEERETGGTPPIIQTVRAALAFWVKEYISCEEIEKREQLYINKALERLGSNPNIEVLGNLKAKRQAILSFLIYSTTNSSSAGEWSDGNQENEGELDLWAETGNQRGKPLHGPFVAALLNDLFGIQARGGCACAGPYGHELLHINKFQSLAIRSAVQEGYIGAKPGWTRVSFPYYMSEEDFEYILKAIEFLAVYGQRFFPLYSFNLINGSWRLKTEKIEALTKEGNCNFPSHNIGVKQGGVMRRDESYFEAAKCIASTLPKFPSQGILQEDVDPNIFCFRV 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2856 642 PANTHER CYSTEINE DESULFURASE 23 596 - -
Ssu5g2856 642 PANTHER CYSTEINE DESULFURASE 599 642 - -
Ssu5g2856 642 Gene3D - 112 338 IPR015421 GO:0003824
Ssu5g2856 642 SUPERFAMILY PLP-dependent transferases 87 550 IPR015424 -
Ssu5g2856 642 Pfam Aminotransferase class-V 115 434 IPR000192 -
Ssu5g2856 642 PANTHER - 599 642 - -
Ssu5g2856 642 PANTHER - 23 596 - -
Ssu5g2856 642 Gene3D Aspartate Aminotransferase, domain 1 369 555 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2856 Ssu-Chr5 74870709 74874028 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2856 - - gmx:100777453 1155.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2856 5 74870709 74874028 Ssu5g2856 5 74870709 74874028 ECH