Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2855 ATGTGGGGTGGATGCTGGCCGGAGGGAGTGCAGCTGGAGAGGATCCAAGCTGCTCCTCTTCTTGCATATTGCATGCGTAAACGACGTCACATTTTTAAAGCACAGAAACCCAAATTCGCAGAGGCTGAAGGCCAGAGCAAGGCCAATAATAATGAGGTAGCCAGCGTTTCAAGCACAGAAGAAACGTCGTCTCATGATTTTCGCTACCACTCAGAGTCCTTCAAGGAGCTCGTGGAGATGGGCCTGCCGTGTAACCGTGTAGAGTTCCACTCTCCTTTTGGAAGACGAATACTTGTCTATGCTGATCACACGGCTTCTGGTCGCAGCCTTCAGTACAATGAATACTTCATCACCAATCATCTTCTTCCTTTCTACGGCAACACTCACACGTGCGACAGTTACGTGGGAAGCAGAACAACAAAAATGGTACACGAAGCAAGCGAGTACATTAAAAAATGCTTAGGTGGTGGGCAAGACGATGCACTCATATTATGTGGCTCGGGCACAACTGCAGCCATCAAGAGGCTGCAAGAAGTAATGGGAATCGCTGTGCCGTCTATTTTGAGGGAAAGGGTTTTAAAGAGCCTTAGCACAGAAGAAAGATGGTTGGTTTTTGTTGGACTGCATGAGCACCATTCCAACCTCCTTTCTTGGAGGCAAAGCTTGGCTGAGGTGGTAGAAATTGGTCTTGATCACAAGGGATTGCTTGACATGGATGCTCTAAAGCTACAACTTCAGGCCTACAAAGATACCAACCGACCCATGTTGGGATCTTTCTCAGCTTGTAGCAATGTCACGGGAATCTACACAGATACACGTGCAGTTGCTCAGCTTCTTCATCAGTACAAAGCCTTTGCATGCTTTGATTTCGCAGTAAGCGGTCCATATGTGGAGATTGACGTGAGGTCGGGGCAGAGTGATGGGTATGATGCTGTGTTCCTGAGTCCAGATAAGTTTCTCGGTGGTCCTGACTCTCCTGGGGTGCTCCTTATGAACAACGCCCTCTACCGGTTAAGATCTTCGCCGCCATCAACATGCGGAGGTGGAACTGTGGATTATGTCAATGGATTCAACGAGAAGGACACATTGTACTTGGAGAACATAGAGGAAAGGGAAATCGGGGGCACGCCCCCTATAATCCAGACATTGAAAGCGGCATTGGCATTTTGGGTGAAAGAGTACATCGGCTACAAAGAGATTGAGAAACGTGAACAGCTGTACATTAACAAAGCACTTAAGAGACTCGTATCCAACCCAAACATTGAGATTCTTGGAAACTTGAGCACTAATCGACAAGCTATATTGTCGTATATCATTTATTCTACCACCAATGATCCTTTATCATGTGGTTGGGGCAGTAAATGGCTAGTTGATATCCAGAACCAGGATAACAAAAGAGAACTTAATTTATGGGCAGAGACAGGGAGAAAAAGAGGTAAGCTACTTCATGGCCCTTTTGTTGCAAGACTACTAAGTGACCTCTTTGGCATCCAAGCTCGTGGTGGGTGTGCCTGTGCTGGACCTTATGGCCACGAATTGCTCAATATCAACAAATATCAATCGCTTGCTATTAGATCAGCAATTCAAGAGGGTTATGTTGGAGTAAAACCTGGATGGACTAGGGTTAGTTTTCCTTATTACATGGAGGAAGAAGAATTTGAGTTCATTTTAACAGCGATAGAGTTTGTAGCAATCTATGGCCAACGGTTCCTTCCCCTGTATAGCTTCAATTTGAGAAACGACAGTTGGAGAATGAAGATAGAGCAACTTGAGGCTCTAATCAAGGAAAAGAATTACAACTTTCAAAAAACTCTAGAGGAAACAAAAAGTGATTTGAAACCACTCAAAGCACGCGGTGAATGTAATATTGGAGTTAAACAAGTTAGTATGTTAAGGAAATCATACATAGATATAGCAAAATATATTGCTAATCTTCTCCCGAAGTTCCCTCCTCAAAGCATACTCCAGGGAGATGTAAATCCCAATATCCTCTATTTTAGGGTTTAA 2007 0.4444 MWGGCWPEGVQLERIQAAPLLAYCMRKRRHIFKAQKPKFAEAEGQSKANNNEVASVSSTEETSSHDFRYHSESFKELVEMGLPCNRVEFHSPFGRRILVYADHTASGRSLQYNEYFITNHLLPFYGNTHTCDSYVGSRTTKMVHEASEYIKKCLGGGQDDALILCGSGTTAAIKRLQEVMGIAVPSILRERVLKSLSTEERWLVFVGLHEHHSNLLSWRQSLAEVVEIGLDHKGLLDMDALKLQLQAYKDTNRPMLGSFSACSNVTGIYTDTRAVAQLLHQYKAFACFDFAVSGPYVEIDVRSGQSDGYDAVFLSPDKFLGGPDSPGVLLMNNALYRLRSSPPSTCGGGTVDYVNGFNEKDTLYLENIEEREIGGTPPIIQTLKAALAFWVKEYIGYKEIEKREQLYINKALKRLVSNPNIEILGNLSTNRQAILSYIIYSTTNDPLSCGWGSKWLVDIQNQDNKRELNLWAETGRKRGKLLHGPFVARLLSDLFGIQARGGCACAGPYGHELLNINKYQSLAIRSAIQEGYVGVKPGWTRVSFPYYMEEEEFEFILTAIEFVAIYGQRFLPLYSFNLRNDSWRMKIEQLEALIKEKNYNFQKTLEETKSDLKPLKARGECNIGVKQVSMLRKSYIDIAKYIANLLPKFPPQSILQGDVNPNILYFRV 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2855 668 MobiDBLite consensus disorder prediction 44 61 - -
Ssu5g2855 668 PANTHER - 85 668 - -
Ssu5g2855 668 SUPERFAMILY PLP-dependent transferases 98 561 IPR015424 -
Ssu5g2855 668 Coils Coil 587 607 - -
Ssu5g2855 668 Pfam Aminotransferase class-V 117 436 IPR000192 -
Ssu5g2855 668 Gene3D - 117 348 IPR015421 GO:0003824
Ssu5g2855 668 Gene3D Aspartate Aminotransferase, domain 1 376 568 IPR015422 GO:0003824
Ssu5g2855 668 MobiDBLite consensus disorder prediction 42 61 - -
Ssu5g2855 668 PANTHER CYSTEINE DESULFURASE 85 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2855 Ssu-Chr5 74848953 74857322 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2855 - - gmx:100776921 1110.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2855 5 74848953 74857322 Ssu5g2855 5 74848953 74857322 ECH