Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2854 ATGGCTTCTAAGATCTTCTATCTATTTCTCCTCTTGCTGGCACACCTTCAACCACACGCATTTGTGAAAGGAGATGCCACCTTGATAAAGAAAACCTGCAAGAACACCAAGTACTACGACCTGTGCTTCTCCTCCCTGAAATCCGATCCAAGCAGTCTAAACGCAGACCCAAAGGGCTTAGCTGTGATCATGGTTGGGATTGGAAAGGCCAATGCCACCTCCACCTCTTCCTATTTGTCCTCTCAGTTGCTTGGCATTGCCAATGACTCCACCTTGAAAAGGGTGCTGAAGGAGTGTGCAGACAAGTACACCTATGCCAGTGATGCGCTCCAAGCTTCTGCTCAGGATTTGGCTAATGAGGCATATGACTATGCTTCCGTGCACATCACTGCAGCCTCTGATTACCCCAATGTTTGTCACAACTTATTCAAACGCTACCTAGGTTTGGTTTACCCTCCTGAGCTTGCTCGTAGAGAGGATGGTTTGAAGCATTTATGTGATGTTGCTTTGGGGATTGTTGAGAGTCTTAATTGA 534 0.4682 MASKIFYLFLLLLAHLQPHAFVKGDATLIKKTCKNTKYYDLCFSSLKSDPSSLNADPKGLAVIMVGIGKANATSTSSYLSSQLLGIANDSTLKRVLKECADKYTYASDALQASAQDLANEAYDYASVHITAASDYPNVCHNLFKRYLGLVYPPELARREDGLKHLCDVALGIVESLN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2854 177 PANTHER CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2 9 176 - -
Ssu5g2854 177 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 176 IPR035513 -
Ssu5g2854 177 SMART PMEI_2 24 172 IPR006501 GO:0004857
Ssu5g2854 177 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 175 IPR006501 GO:0004857
Ssu5g2854 177 CDD PMEI_like 33 173 - -
Ssu5g2854 177 Pfam Plant invertase/pectin methylesterase inhibitor 28 172 IPR006501 GO:0004857
Ssu5g2854 177 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 176 IPR035513 -
Ssu5g2854 177 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2854 Ssu-Chr5 74833920 74834453 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2854 - - vra:106768612 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2854 5 74833920 74834453 Ssu5g2854 5 74833920 74834453 ECH