Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2853 ATGAAAGGTGGCACGGTTCAGATTAGCTGGCACGAGAGCAAACCCGTCTTAACCCTCGATTTCCACCCTCTCTCCGCCACTCTCGCCACCGCCGGCGCCGATTTCGAcatcaagTTTTGGTCAATAAAATCCGCGGGGACACAGAAGAAGCTTCCCATAGTTTCCTATCTTAGTAACCTCTCTTACCATAGTTCTGCAGTGAATGTTATTCGCTTCTCTTCTTCCGGGGAATTGCTGGCCTCTGGTGCTGATGGAGGGGACCTGATAATATGGAAGCTACATTCTACTGATACTGGTCAGACATGGAAGGTTCTCAAGATCTTACGATCTCATCACAAGGACATTCTAGACCTGCAGTGGTCTACCGATGCCATGTATATCATATCTGGATCAGTTGATAATTGTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAAACGTTGGATGCCCATGCACACTATGTTCAGGGGGTTGCATGGGACCCTCTAGGGAAATATGTTACTTCTCTGAGTTCTGATAGGACTTGCCGAATTTACATGAATAAGCCTCATAAATCAAAGGGCATTGagaaaatcaattatgtttGCCAGCAAGTCATTTCCAAGGCAGATCAGCCATTATTAAAGAATTCTAAGGAGACAAAATTTCATATCTTCCATGATGAGACATTGCCATCTTTCTTCAGAAGATTAGCATGGTCTCCTGATGGTTCATTTCTACTTGTGCCTGCAGGCTCTTACAAAATTAATACTGCATCTGAATCTGTGAATGCGGCTTACATATTTTCTAGAAAAGATCTTTCTAGGCCTGCTATACAGCTTCCCTGTGCAAGCAAAGCTGTTGTAGCTGTCCGGTTCTGCcccatattttttaaacttcgGGGATCGTACTCAGCTGGGTTATTTAAGCTCCCATATCGCATCATATTTGCTGTGGCCACTTTGAATTCATTGTACATTTATGACACTGAGAGCACCTCTCCAATAGCTATATTAGCTGGTCTTCACTATGCCGCAATAACAGATATTACCTGGTCATCTGATGCTCATTATTTGGCATTGTCGTCACAAGATGGTTTCTGCTCGTTGGTGGAATTTGAAAATGACGAACTTGGATTACCTTACTCTTTATCAGAAGGAAAGGTCTCAAACAAGGATATTAAGAGCACTGTGCAGACAGCCAATGACAATGTCACTGTACCAACTGGGAATGTCAGTGAAGTTCTAGCAGAGGTCAAGAAAATGGAATCAGAAGAGAAGGCTGATGACGTGGTCATTGAAGCATCTGGGAATATTGGTGCTGTCATTGCAGAAAGCGGGAAAACTGTAACACAAGAGAATGCTGATACGATCATCGAGTCAACTGGGAATTTAGCAGATTTTAGGAAAAATGAAGCAGTAGAGAAAGCTGTTGGCATGATCATTGAGGCAACGGGGAATGTTGAAGGGGTTATAGCAGATAGTAGGAAAAATGAAGCAGAAGAGAAAACTGATGACATGGTCATTGAAACAACCGGAAGTATTGGTACTGCTGAATTAGATAGTAGAAAAGCTGAATCAGAAGATAAGGCAGAGAAACAGCTATGGAATTCGGGTACTGTAAATTTTGGAGCCCAAGACAAGGCAGAGAACCAACCAGCTAATCCAGATCCAGATGGTAAACAAACGGAAGCAAAGGAGAAGACAGAGAAACTGCAATCAAGTTTAGACGGTATAAAATCAGGGCCAGAAGAAAAGGCAGTGCAACAATTGTCCAGTCCGAAGAGTACACCCATATCAAATAAGCCAGCCAAGAAGCGTATTACTCCTATTGCCATTGATCCATGA 1833 0.4201 MKGGTVQISWHESKPVLTLDFHPLSATLATAGADFDIKFWSIKSAGTQKKLPIVSYLSNLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKLHSTDTGQTWKVLKILRSHHKDILDLQWSTDAMYIISGSVDNCCIIWDVNKGTNLQTLDAHAHYVQGVAWDPLGKYVTSLSSDRTCRIYMNKPHKSKGIEKINYVCQQVISKADQPLLKNSKETKFHIFHDETLPSFFRRLAWSPDGSFLLVPAGSYKINTASESVNAAYIFSRKDLSRPAIQLPCASKAVVAVRFCPIFFKLRGSYSAGLFKLPYRIIFAVATLNSLYIYDTESTSPIAILAGLHYAAITDITWSSDAHYLALSSQDGFCSLVEFENDELGLPYSLSEGKVSNKDIKSTVQTANDNVTVPTGNVSEVLAEVKKMESEEKADDVVIEASGNIGAVIAESGKTVTQENADTIIESTGNLADFRKNEAVEKAVGMIIEATGNVEGVIADSRKNEAEEKTDDMVIETTGSIGTAELDSRKAESEDKAEKQLWNSGTVNFGAQDKAENQPANPDPDGKQTEAKEKTEKLQSSLDGIKSGPEEKAVQQLSSPKSTPISNKPAKKRITPIAIDP 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2853 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Ssu5g2853 610 MobiDBLite consensus disorder prediction 581 598 - -
Ssu5g2853 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Ssu5g2853 610 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Ssu5g2853 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Ssu5g2853 610 Gene3D - 209 419 IPR015943 GO:0005515
Ssu5g2853 610 Gene3D - 4 208 IPR015943 GO:0005515
Ssu5g2853 610 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 609 - -
Ssu5g2853 610 MobiDBLite consensus disorder prediction 489 503 - -
Ssu5g2853 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Ssu5g2853 610 MobiDBLite consensus disorder prediction 488 610 - -
Ssu5g2853 610 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 609 IPR045145 GO:0006335
Ssu5g2853 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Ssu5g2853 610 Pfam WD domain, G-beta repeat 60 92 IPR001680 GO:0005515
Ssu5g2853 610 Pfam WD domain, G-beta repeat 10 41 IPR001680 GO:0005515
Ssu5g2853 610 Pfam WD domain, G-beta repeat 102 140 IPR001680 GO:0005515
Ssu5g2853 610 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Ssu5g2853 610 MobiDBLite consensus disorder prediction 555 569 - -
Ssu5g2853 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Ssu5g2853 610 SMART WD40_4 143 182 IPR001680 GO:0005515
Ssu5g2853 610 SMART WD40_4 53 92 IPR001680 GO:0005515
Ssu5g2853 610 SMART WD40_4 327 367 IPR001680 GO:0005515
Ssu5g2853 610 SMART WD40_4 101 140 IPR001680 GO:0005515
Ssu5g2853 610 SMART WD40_4 3 41 IPR001680 GO:0005515
Ssu5g2853 610 MobiDBLite consensus disorder prediction 529 544 - -
Ssu5g2853 610 SUPERFAMILY WD40 repeat-like 13 399 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2853 25 181 Miscellaneous Gene Families AT5G08390 26.752 1.03e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2853 K10751 - gmx:547606 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2853 5 74819049 74822919 Ssu5g2853 5 74819049 74822919 ECH