Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2852 ATGAGTGCTTTGAATAGAACCATTTCCTTCAACAAAACCGCCTCCTTCAATCGAAGGACTCTCGCCATTGGAAGTCCCAGAGTAAATCATAACCGCTTCGGATGTGTCTTTCTCAGGTTTCAGGTTCTTGTCATCACTGCCTCTGTGATTTCCTTCTTCGTAGCCGTAGGTGGTGGCTACATATACGTGCTTCCAAGCCTTAGCCGCGCGTTTTTCAATGGCCAAGTTCTCTTATCTGAAACTAACAACGGATCAGTGAGAGAATGTGATGTCTTTGATGGAAGCTGGGCGCAGGTTCAAGGTCACCCCTCGTACAATGCCACAGAGTGTCCTTTTGTGGAACGAGGGTTTGATTGTTTAGGGAACGGGAGGAGTGACAGGGATTATCTTAGTTGGAGGTGGAAGCCAAGGAGTTGTGAGATTCCAAGGTTTGATGTGCGTGCTGTTTTGGAAATGTTGAGAAGCAAAAGGGTTGTTTTTGTTGGTGATTCAATGAGTAGGACACAGTGGGAGTCTCTGATTTGTATGCTGATGGCTGGGGTTGAAGATAAGAGGGGTGTTTATGAAGTGAACCAGAATAAGATAACAAAGAGGATCAGGTTCTTAGGGGTTCGGTTCAGTGCCTTCAATTTCACCGTTGAGTTTTTCCGCTCGGTTTTCCTGGTGCAGCAGGGTCGGATGCCTAGACATGCACCAAGAAGGGTCAAATCCACACTTTTATTGGACAGGTTGGATGATATGAGTGACCAGTGGGTTAATTCAGATATTCTGATATTCAATACTGGACATTGGTGGGTGCCGTCTAAGCTTTTTGATATGGGCTGCTATTTCCAGGTTGGAAGCTCTCTGAAACTTGGGATGTCAATTCCTGCTGCCTTTAGAATAGCACTTGAAACTTGGGCATCATGGGTTGAAAgagagattaataaaaatagaacacACATCTTCTTTAGGACTTTTGAGCCATCTCACTGGAGTGATCTTACACGTAGGATTTGCAATGTGACCCAGTACCCAACATTAGAAACTAATGGAAGAGACCAAAGCTTGTTTTCAGATACAATTTTAGAAGTTGTAAAGAATGTTACTATTCCTATAAATGTTCTCCATGTTACTTCTATGTCTGCTTTCCGGAGTGATGCACATGTTGGTAACTGGAGTGACAACCCATCTATTCAAGATTGTAGCCACTGGTGTCTTCCTGGAGTACCTGATATGTGGAATGAAATTATCCTATCCCAACTTTTTACTGAATCTGAAATCCCTTTTCAGCAAATGAAATCACTCAGTAAGTTCAGTTACCttctaatactttttttcatttttgcctGGGAGCCTATGGTATGA 1347 0.4202 MSALNRTISFNKTASFNRRTLAIGSPRVNHNRFGCVFLRFQVLVITASVISFFVAVGGGYIYVLPSLSRAFFNGQVLLSETNNGSVRECDVFDGSWAQVQGHPSYNATECPFVERGFDCLGNGRSDRDYLSWRWKPRSCEIPRFDVRAVLEMLRSKRVVFVGDSMSRTQWESLICMLMAGVEDKRGVYEVNQNKITKRIRFLGVRFSAFNFTVEFFRSVFLVQQGRMPRHAPRRVKSTLLLDRLDDMSDQWVNSDILIFNTGHWWVPSKLFDMGCYFQVGSSLKLGMSIPAAFRIALETWASWVEREINKNRTHIFFRTFEPSHWSDLTRRICNVTQYPTLETNGRDQSLFSDTILEVVKNVTIPINVLHVTSMSAFRSDAHVGNWSDNPSIQDCSHWCLPGVPDMWNEIILSQLFTESEIPFQQMKSLSKFSYLLILFFIFAWEPMV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2852 448 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 141 413 IPR026057 GO:0016740
Ssu5g2852 448 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 31 417 IPR029962 GO:0016413
Ssu5g2852 448 Pfam PMR5 N terminal Domain 88 140 IPR025846 -
Ssu5g2852 448 PANTHER PROTEIN TRICHOME BEREFRINGENCE-LIKE 7 31 417 IPR029964 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2852 Ssu-Chr5 74811107 74816003 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2852 - - gmx:100775841 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2852 5 74811107 74816003 Ssu5g2852 5 74811107 74816003 ECH