Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2847 ATGATCTGTCACCACACAGGTGCCGTTTCCACCCCCATACCTCCTACATATAATAAATACGAACCTCACACGAATTTCCACTACGCTCTATTCTTCTCTTTGACCAGGAAAGAGAAAACAGAGATGGGAAGTTTAGAGGAGGACGAGTTGGTACGAATGGTGCAAGATTTTATAGAATCTGAATCAACATCCCCCACAAGTTCCACTTCCTCAAATTGCCATACCTTAAACCACCGAacccaatattttattttacagGATATTCTAAGGAGTGAGGGTGGTACAGCAGCAGAGGCTAACGTATTGAAGTGTGTATTGAAGCATATGAGAAACAGAAAGGGTGCGGAGAAAACAACAAGTCTCAGTAGATGGCTTGTTATGAGGTTGAAAATGGATGGCCTTAATGCTTCTATATGCCACACGTCTTGGGCCACCCTTTTGGGCTGTCCTGCTGGTGAATACGAGTATATTGAAGTGATAGTAGAGGAAGAGAATTATGCTAAACCAGTGAGGCTCATAGTAGATATAGACTTCAGGTCCCAATTTGAACTTGCAAGGCCTACACAACACTACAAAGAATTGACAGACTCACTCCCAGTCATTTTGTTGGGATTGAGAACAAACTGTGCAAGATAA 636 0.4151 MICHHTGAVSTPIPPTYNKYEPHTNFHYALFFSLTRKEKTEMGSLEEDELVRMVQDFIESESTSPTSSTSSNCHTLNHRTQYFILQDILRSEGGTAAEANVLKCVLKHMRNRKGAEKTTSLSRWLVMRLKMDGLNASICHTSWATLLGCPAGEYEYIEVIVEEENYAKPVRLIVDIDFRSQFELARPTQHYKELTDSLPVILLGLRTNCAR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2847 211 PANTHER T14N5.3 PROTEIN 42 205 - -
Ssu5g2847 211 TIGRFAM A_thal_3542: uncharacterized plant-specific domain TIGR01615 126 205 IPR006502 -
Ssu5g2847 211 PANTHER OS03G0796600 PROTEIN 42 205 IPR006502 -
Ssu5g2847 211 Pfam PDDEXK-like family of unknown function 53 204 IPR006502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2847 Ssu-Chr5 74636833 74637823 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2847 - - gmx:100782815 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2847 5 74636833 74637823 Ssu5g2847 5 74636833 74637823 ECH