Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2840 ATGGACGCGGAGCTAAAAGCGGCGAAGGCGGCGTACCGGAACGCCAAGGCGGAGGGAAACCACAGAGAGGAGGCGCGGTGGGCCAACGTCATCGGCGACATTCTGAAAAACCGAGGAGAGTACGTCGAAGCCCTCAAATGGCTCCGAATCGATTACGACGTTTCGCTCAAACATTTACCGGAAAAGCACTTGCTCCCAACCTGCCAATCCCTCGGCGAAATGTACCTCCGCCTCGAACAATTTTCCGATGCCCTAATTTACCAGAAAAAGCACTTGGAGCTTGCGAGGGACGCGAACGACGTCGTCGAGCAGCAGCGGGCGAGCACGCAACTCGGTCGCACTTACCACGAGCTGTTCTCGCGATCGGACCACGACCACAACTCGATTCGCAACGCGAAGAAGTACTTCAAGTGCTCGATGGATCTCGCGGTGAAGCTCAAGGAGAATCCCCCGAACAGCAAGTCTTCTTTCCTCAAGGAGTACATCGACGCGCACAACAACACAGGCATGCTGGAGATGGATCTCGAGAACTTGCACGAGGCGCGGAAGATCTTGACCAGAGGATTGGAGATTTGCGACGAAGAGGAGATCAGCGAATACGATGATGGCCGCAGTAGACTCCACCACAACCTTGGGAATGTGTATATGGAACTTAGGGATTGGGATGAAGCTAGGCAAAACATTAAGAGGGATATTGTAATTTGTAACAGAATTGGACACCGTCAAGGGGAGGCCAAGGGGTATATTAATCTTGGTGAAGTGCATTACAGGACTCAGAGGTATGAAGATGCGAGGTCTTATTATGAGAAGGCGCTTGGTTTGGCAAAGACATTGGAGGATGAGGATGCTTTGGCTAGGCAAATTGAGCAGAATATTGAAACTGTGAGAGAAGCTGTTAAGGTAATAGCTGCTATAAAGAAAGAAGAGCAGAGCCTTAAAAAGCTCAAAAGAGATATAGCCACTGCCAGAGGGACACCGCATGAGCGCAAATGTTTGCTGCAGCAGAACGTGGTTCTTGAACGCCTCGTTGAGAAAGCAAGGATGATCTCCGCGTGGGAGAAGCATTGTGAATTTgcaaaggagaagaagaaaatagcTACTGAACTCTGTGATAGGCAGAGGCTAGGTGATTCATATCTGGACGTTGCAGAATCATACCAGAAGCTCAGAAAATTCAACAAAGCAATCAAATGGTACAAAAAGAGTTGGGAAATGTACAAATCAATTGGTAACTTAGAGGGGCAAGCActtgtgaaaattaatattggtAATGTTTTGGATTCTACTGAAAATTGGAGAGAAGCATTGGAAGCATTTCAAGAGAGCTACAGTATCGCTGTTGAAGCAGACCTTCCTGATGTGCAACTCTCCGCCTTGGAAAATATGCATTATAGCAACATGATAAGatttgatgatgaggatgagacCAGGAGGTTGAAGCTTCTAATTGATAAGCTGAAGAAGTCAGAAGAAAAAGTGGCAGAAGCTAAAAGTATGCTAGAGGATCGTTGCTCTGAAACTGATACGGAAGCAGATGATTATCTGTCAAATAGTGGGTCTGATGATTTTTGCTTTCCAAAGACAATTTCTCGATCAAAAACTCTGACTACTGGAGAAGAATTGAAAGATGACGTGTGTCTTATGTCACTGTATCAGTCCATAAAAGGCTCATCCAAAAAGAAAGCAGGCCACAAAGAAAGTCTTACCAACTCTACCAAGCAAGATGAGCAGTCACCCAGTAGTCTGAAAAATCAAACCAACGATCATCAGACGGTTGTTGGTCGTAAACGTGTCCGTGTAATTCTTtccgatgatgatgatgatgatgaggtgGAGTGTTCAAGCAGAAAGGATCGTGATTGTCTGGTAGAGGACTTGCCCTCGTATGATGCAATTAAGAGTAAAACcagtccttgtaaaattcagGTTATCTCAGAGTATGGATCCAAGTGTGCAATTAATGTTGAAGAAAGTAGTAGTTCTTTCAAATACTGTAGTCCACATACAGCCACTAAAACTGGAAGACATTCCAGGTCTTTGAGCAATGATATAGTTGCTAAACCTGATTTTCCTAGTGGTAAATGTGACACTGATGTCTCTGGCAAACAAAATGATATTGCCCATCCCATGTTGCATCATTCCCAAACTAATCTCCAGCAATATATTACATGCCGGATTGGGAATGATCTAATACATGTAGAAGCATCCTTATGTACCACTGGTGATCAGTTGAACATTGACTCTTTCAAGGCTGTAGTTGCATGCTTATATTATCTACAATTTCCAACCGAAAAGAGATCAGAGGgtTTGTTGCCCATTATTGAGCATATTAAATGTGCTGGAAGAGATGTAGAATCCCTGGAAACTGTTGAACATCTTAAGGAAGTTCTGGGCAATGATATGGTTGAAGCTTCCGTTGATGGATGGATTCACAAGCGCCTCATAAAAATGTATGTAGACTGCTGTAAGGAGTTGTCTGAGGTACCAAACATCAAGGTACTGAAGAAGCTTTACAATTTAGAGGTTTCAGATGACGAAATTGTTGTGTCTGACTGTGACCTGCAAGATTTGTCTATTACACCGTTGATAAATGCACTGCATTCCCAGAAGTCATTTGCAATGCTTGACCTCTCTCACAATTTGTTAgGAAATGGAACAATCGAGAAACTTCAAAAGGTGTTCACAGCATCAGGTCAATCTTATGGTGGCTTAACTCTGGATTTGCATTGCAATCGATTTGGCCCAACAGCGTTGTTTCAGATTTGTGAATGTTCACTGCTATTTGATCGACTAGAAGTGCTTAACATTTCTGGAAACCGTCTTACTGATGCATGTGGATCTTATCTTTCAACAATCTTAAAAAACTGTACGGCTCTTTGTAGCTTGAATATAGAGAACTGTTGTGTCACATCCAGAACTATTCAAAAAATTGCGGATGTATTGGACTCTAGATCTGTACTTTCCCATCTATGTATAGGACACAACAGCCCTGTATCTGGAAATGCTATAGTTAATCTTCTGTCCAAGCTTTCTACTCTGAAAAGGTTTTCTGAGTTGAATATGAGAGGTCTAAAACTAGGCAAACCAGTTGTCGATACCCTTTGCAAGCTTGCAGGGACCTTAACTTTATCAGGACTAATACTTGGAGGCACGAGTATTGGAACCGAAGGGGCGATAAAATTAGCAGAATCATTGCTCAAAGGGACTGAAGAGCTTGTGAAACTTGACCTATCATATTGTGGTCTAACATCTAACTGTGTTTTAAACAtcagtgttaattttttttgttccatCCTAGAGCTGAACCTGGAAGGAAATCCTATCATGTCTGAGGGCAGCAatactttattttctcttctcgtAAACCCACAGTGCTGTCTCAAAGTTTTGGTCCTTAGAAAGTGTCAGCTTGGGCTTGCTGGAATTCTTCAAATAATTGAGGGTCTGGCAGAGAACAGCTGCCTTGAAGAACTTAATCTTGCTGATAATTCTGTTCCAAAGGAAGTTTCTGCCCTACAATATGATTTATCGGTAAAATGCTGCTCACAAAACCAGGAGCAGAAACTTGATGATAATCAAGAGGTCGTTTGCTCTCTACACACTGCCGACCATGAGCTGGAAGTTGCTGACAGTGAAGGTATTCCAGTAGAAGCTGCTGCTTCTGGAATTGAGGACAGCTGTGCCAGTTCATGTCAAAGAAATTCATCTCCCGAGTGCCATTTCACTCAACAGTTTTCAATTGCTATTGGTAAGGCAAATAACTTGCAATTACTAGACCTTAGCAATAATGGTTTTTCCGCTCAAGCTGCAGAAACATTCTACGGTTCGTGGACGACTTTACGACCCCTTTCAAGTCAGAAGCACATTACTGAGCAGATTATTCATTTCTCAACGAGGGAGAATAAGTGCTGCAGAGTGAAACCTTGCTGCAAAAAAGTTTGA 3942 0.4163 MDAELKAAKAAYRNAKAEGNHREEARWANVIGDILKNRGEYVEALKWLRIDYDVSLKHLPEKHLLPTCQSLGEMYLRLEQFSDALIYQKKHLELARDANDVVEQQRASTQLGRTYHELFSRSDHDHNSIRNAKKYFKCSMDLAVKLKENPPNSKSSFLKEYIDAHNNTGMLEMDLENLHEARKILTRGLEICDEEEISEYDDGRSRLHHNLGNVYMELRDWDEARQNIKRDIVICNRIGHRQGEAKGYINLGEVHYRTQRYEDARSYYEKALGLAKTLEDEDALARQIEQNIETVREAVKVIAAIKKEEQSLKKLKRDIATARGTPHERKCLLQQNVVLERLVEKARMISAWEKHCEFAKEKKKIATELCDRQRLGDSYLDVAESYQKLRKFNKAIKWYKKSWEMYKSIGNLEGQALVKINIGNVLDSTENWREALEAFQESYSIAVEADLPDVQLSALENMHYSNMIRFDDEDETRRLKLLIDKLKKSEEKVAEAKSMLEDRCSETDTEADDYLSNSGSDDFCFPKTISRSKTLTTGEELKDDVCLMSLYQSIKGSSKKKAGHKESLTNSTKQDEQSPSSLKNQTNDHQTVVGRKRVRVILSDDDDDDEVECSSRKDRDCLVEDLPSYDAIKSKTSPCKIQVISEYGSKCAINVEESSSSFKYCSPHTATKTGRHSRSLSNDIVAKPDFPSGKCDTDVSGKQNDIAHPMLHHSQTNLQQYITCRIGNDLIHVEASLCTTGDQLNIDSFKAVVACLYYLQFPTEKRSEGLLPIIEHIKCAGRDVESLETVEHLKEVLGNDMVEASVDGWIHKRLIKMYVDCCKELSEVPNIKVLKKLYNLEVSDDEIVVSDCDLQDLSITPLINALHSQKSFAMLDLSHNLLGNGTIEKLQKVFTASGQSYGGLTLDLHCNRFGPTALFQICECSLLFDRLEVLNISGNRLTDACGSYLSTILKNCTALCSLNIENCCVTSRTIQKIADVLDSRSVLSHLCIGHNSPVSGNAIVNLLSKLSTLKRFSELNMRGLKLGKPVVDTLCKLAGTLTLSGLILGGTSIGTEGAIKLAESLLKGTEELVKLDLSYCGLTSNCVLNISVNFFCSILELNLEGNPIMSEGSNTLFSLLVNPQCCLKVLVLRKCQLGLAGILQIIEGLAENSCLEELNLADNSVPKEVSALQYDLSVKCCSQNQEQKLDDNQEVVCSLHTADHELEVADSEGIPVEAAASGIEDSCASSCQRNSSPECHFTQQFSIAIGKANNLQLLDLSNNGFSAQAAETFYGSWTTLRPLSSQKHITEQIIHFSTRENKCCRVKPCCKKV 1313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2840 1313 Coils Coil 278 325 - -
Ssu5g2840 1313 Gene3D Tetratricopeptide repeat domain 334 514 IPR011990 GO:0005515
Ssu5g2840 1313 PANTHER PROTEIN TONSOKU 2 1312 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Ssu5g2840 1313 Pfam Tetratricopeptide repeat 379 446 - -
Ssu5g2840 1313 Pfam Tetratricopeptide repeat 205 276 - -
Ssu5g2840 1313 Gene3D Tetratricopeptide repeat domain 1 326 IPR011990 GO:0005515
Ssu5g2840 1313 SUPERFAMILY TPR-like 161 445 IPR011990 GO:0005515
Ssu5g2840 1313 MobiDBLite consensus disorder prediction 558 597 - -
Ssu5g2840 1313 SMART tpr_5 245 278 IPR019734 GO:0005515
Ssu5g2840 1313 SMART tpr_5 205 238 IPR019734 GO:0005515
Ssu5g2840 1313 SMART tpr_5 162 195 IPR019734 GO:0005515
Ssu5g2840 1313 SMART tpr_5 65 98 IPR019734 GO:0005515
Ssu5g2840 1313 SMART tpr_5 376 409 IPR019734 GO:0005515
Ssu5g2840 1313 SMART tpr_5 416 449 IPR019734 GO:0005515
Ssu5g2840 1313 Gene3D Ribonuclease Inhibitor 820 1212 IPR032675 -
Ssu5g2840 1313 ProSiteProfiles TPR repeat region circular profile. 245 272 - -
Ssu5g2840 1313 SUPERFAMILY RNI-like 838 1281 - -
Ssu5g2840 1313 SUPERFAMILY TPR-like 10 149 IPR011990 GO:0005515
Ssu5g2840 1313 SMART LRR_RI_2 1124 1151 - -
Ssu5g2840 1313 SMART LRR_RI_2 1040 1067 - -
Ssu5g2840 1313 SMART LRR_RI_2 928 955 - -
Ssu5g2840 1313 SMART LRR_RI_2 869 896 - -
Ssu5g2840 1313 SMART LRR_RI_2 1095 1122 - -
Ssu5g2840 1313 SMART LRR_RI_2 956 983 - -
Ssu5g2840 1313 Coils Coil 479 499 - -
Ssu5g2840 1313 MobiDBLite consensus disorder prediction 572 589 - -
Ssu5g2840 1313 ProSiteProfiles TPR repeat profile. 245 278 IPR019734 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2840 - - gmx:100805682 2286.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2840 5 74488402 74498184 Ssu5g2840 5 74488402 74498184 ECH