Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2836 atggcATCGTCTCATGGTAATGCACACTCGGACGCAGCTAAGATGGAACAAATAATCACCGAGTTCTTTGCGAAGAGTCTTCACATAATACTTGAATCAAGGGCACTCTATGTGTCCTCGCGCAATTCCTATGGTGATCAAGCCGTTTCATCTCCATGTTCATCGTCTTCGTCTTCATCAAGTGTGCGGCCCAGGGATAAGTGGTTCAATTTGGCGCTCCGGGAGTGCCCCGCGGCGTTGGAGAACGTTGAGCTCTGGCGCCAGAACAATCTTGAATGCGTAGTGATTGATGTGATTTTGGTGCAGAGGCCTCTGGGTTGGGACCCTGTGACTGTGAGTTTTTCTCCAAAAAGGGTTGTTCTTCCTAGGAGTTCTTCACCGAAGGAAAGGTGCCCTTTTGGATGGAACACTGATCAGGAAGAATTGGGGGTTGTGGCAAGGACTGAAAAGATTGTGGAGAGGTGGGTTGTGCAGTATGAGAGTAGGAAGACAAGGGATTCTAATTCTGGCAGTAGGAGGTCAAGCAATGTTTCTTTGCATAACTTGTATAAGAAATCGACTTTACTTTTGAGGTCTTTGTATGCCACTGTTAGACTTTTACCtgcatataaaattttcagAGAGCTTAATTCATCTGGACAGATTAGGGACTTTACCCTTGCTCACCGTGTGTCTTCTTTTGTTGAGCCCTTCACCCGGAAAGAAGAGGCTGAAATGATGAAATTCGGGTTCACCCCCGTGGATACTTCTTCTGGTAGGCTGTGTCTTACTGTGATGTATTGCCCGTCAGCCTCAGATGTGAGCCCAGAACCTTCGACTCCGATGTCCCCACAAGTTATACCTGACTATGTTGGGAGTCCATTGGCTGATCCATTGAGGAGATTTCCTTCTCTTCCTGTTGCAGGATTGCCTTCACATGGCTCTCCATCATCGTTGCCATCTTCAAGGCAACGTAGTTGGAGTTTTGACCATTATAGAGCCTCACCTCCTTCTTATTTCCCTTCGCCTACTCATTCAGAATCACTCTTGTCAGTGTCTAATGCAAGTTATCGGCGTTTCCCCCCTGCAAGTTTGCCTCCTCATCCAACTGAGATGTCTTTGATTCAGAAGAAgaatacaaattttgatgattgttatCCCTCTCCATCACCTTCAACCTATAATTCTGGGTCATTACCATGCAAACCACTTTTACGATCTGAAAGTGCTCCGGTCAGCATACCTATTGCTGAAGTTGCTAATTCCCCTGGATACTCCAATAGGCATAATTTGCCTCCATCTCCTCCCCTAAGAGGTTCAAGGGGTGCTGCTAAGATTGATAGAAGTACAAACGCGATGCAAACAGGCGCAACAGCTGAGAAGTTGTTTTCTCTTGGAAAAGATGAGTCTCGAAAATATTCTGGAGTCAAGATATCAGCTAACAGCTCGCCACAGATTTCAATTTCCAGAAGCTCCAGCAGGTCTTATCAGGATGATTTTGATGACACTGATTTTACTTGTCCATTTGATGTGGATGATGATGATATGACGGATCCAGGAAGCAGAGCGGAATCTCTTGATCATGGTCATATGGCTGAGACGCTTGAAGCTGGAGGATTCTTTCCTATTAGAAAGTCTCATGATGCTGCTGTTGGTGCGCTTGTACAGATGCTGAAGAAAGCACCACCTCTCCGTCAAGATTTCTCCACCTCGCAACACCTGTCACAAGGTACACACCCTGAAACCTGGAACACTAACGTTCAAGGGCCCAATCAGATCCTAGAGGCATCAGGGCCAGTGAGCATAATGTCTTCTGGGATCATAGCCACCAGGAAAACAACAGCTGATGCATTGGAAGAGTTCCATGCCTACAAAgagatgaaaaacttgttgctTATGCGAGGTAGTAAGCGCCAGATATAG 1902 0.449 MASSHGNAHSDAAKMEQIITEFFAKSLHIILESRALYVSSRNSYGDQAVSSPCSSSSSSSSVRPRDKWFNLALRECPAALENVELWRQNNLECVVIDVILVQRPLGWDPVTVSFSPKRVVLPRSSSPKERCPFGWNTDQEELGVVARTEKIVERWVVQYESRKTRDSNSGSRRSSNVSLHNLYKKSTLLLRSLYATVRLLPAYKIFRELNSSGQIRDFTLAHRVSSFVEPFTRKEEAEMMKFGFTPVDTSSGRLCLTVMYCPSASDVSPEPSTPMSPQVIPDYVGSPLADPLRRFPSLPVAGLPSHGSPSSLPSSRQRSWSFDHYRASPPSYFPSPTHSESLLSVSNASYRRFPPASLPPHPTEMSLIQKKNTNFDDCYPSPSPSTYNSGSLPCKPLLRSESAPVSIPIAEVANSPGYSNRHNLPPSPPLRGSRGAAKIDRSTNAMQTGATAEKLFSLGKDESRKYSGVKISANSSPQISISRSSSRSYQDDFDDTDFTCPFDVDDDDMTDPGSRAESLDHGHMAETLEAGGFFPIRKSHDAAVGALVQMLKKAPPLRQDFSTSQHLSQGTHPETWNTNVQGPNQILEASGPVSIMSSGIIATRKTTADALEEFHAYKEMKNLLLMRGSKRQI 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2836 633 MobiDBLite consensus disorder prediction 416 456 - -
Ssu5g2836 633 Pfam Autophagy-related protein 13 19 260 IPR018731 GO:0006914|GO:1990316
Ssu5g2836 633 MobiDBLite consensus disorder prediction 469 492 - -
Ssu5g2836 633 PANTHER UNCHARACTERIZED 9 631 IPR040182 GO:0000045
Ssu5g2836 633 MobiDBLite consensus disorder prediction 469 487 - -
Ssu5g2836 633 Gene3D HORMA domain 4 266 IPR036570 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2836 Ssu-Chr5 74456877 74462311 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2836 K08331 - gmx:100798585 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2836 5 74456877 74462311 Ssu5g2836 5 74456877 74462311 ECH