LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g2741	ATGTTCATCGAGAGTTTCAAGGTTGAGAGTCCTAACGTGAAGTACACAGAGACTGAGATTCAGTCCGTGTACCACTACGAAACCACCGAACTTGTTCACGAGAACAAGAATGGCATTTATCAGTGGGTTGTCAAGCCCAAAACtgtcaaatatgaatttaaaaccAACACCCATGTCCCTAAACTAGGGGTAATGCTTGTGGGGTGGGGTGGAAACAATGGTTCAACCCTCACTGGCGGTGTTATTGCTAACCGAGAGGGTATTTCATGGGCAACAAAGGACAAGATTCAACAAGCCAATTACTTTGGCTCGCTGACCCAGGCATCAGCTATCAGAGTGGGGTCTTTCCAAGGGGAGGAAATATACGCCCCATTCAAGAGCCTGCTTCCTATGGTAAACCCCGATGACATAGTGTTTGGGGGATGGGATATTAGTAACATGAACCTGGCTGATGCCATGGGCAGGGCCAAGGTGTTTGACATCGACCTGCAGAAGCAGTTGAGGCCTTACATGGAATCCATGGTTCCACTCCCTGGAATCTATGACCCAGATTTCATTGCTGCCAACCAAGGAGACCGTGCCAACAACGTGATAAAGGGCACAAAGAAAGAACAAgttcaacaaatcatcaaagaCATTAAGGAGTTTAAGGAAACCACCAAGGTTGACAAGGTCGTTGTCCTGTGGACAGCCAACACAGAGAGGTACAGCAACTTAGTTGTGGGACTAAACGACACCATGGAAAACCTCTTGGCTTCCTTGGACAGGAACGAGGCTGAGATTTCCCCTTCCACCTTGCATGCCATTGCTTGTGTTATGGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAATACCTTTGTCCcagGGCTGATTGATCTGGCCATTAAGAGGAACACTTTGATTGGAGGAGACGACTTTAAGAGTGGTCAGACCAAAATGAAATCTGTGTTGGTTGATTTCCTTGTGGGGGCGGGTATCAAGCCAACATCAATAGTGAGTTACAACCATCTGGGAAACAATGATGGCATGAATCTTTCAGCCCCTCAAACCTTCCGCTCCAAGGAAATCTCCAAGAGCAACGTTGTTGACGATATGGTCAACAGCAATGCCATCCTCTATGAGCCTGGTGAACACCCAGACCATGTCGTTGTTATtaaggtaattttattttcactctctcTCCCTTGCCTTTCAAATTCAATTGGTTGTTTATGTTCATTGCTTTTGCAGTATGTGCCTTACGTTGGAGACAGCAAGAGGGCCATGGACGAGTACACTTCAGAGATATTCATGGGTGGAAAGAGCACAATCGTGCTGCACAACACTTGTGAGGATTCACTGTTAGCTGCTCCTATTATCTTGGACTTGGTCCTTCTTGCTGAGCTTAGCACTCGAATCCAGTTTAAAGCCGAAGATGAGGTCTGTTATATGTTGGTTGCTTaa	1446	0.4447	MFIESFKVESPNVKYTETEIQSVYHYETTELVHENKNGIYQWVVKPKTVKYEFKTNTHVPKLGVMLVGWGGNNGSTLTGGVIANREGISWATKDKIQQANYFGSLTQASAIRVGSFQGEEIYAPFKSLLPMVNPDDIVFGGWDISNMNLADAMGRAKVFDIDLQKQLRPYMESMVPLPGIYDPDFIAANQGDRANNVIKGTKKEQVQQIIKDIKEFKETTKVDKVVVLWTANTERYSNLVVGLNDTMENLLASLDRNEAEISPSTLHAIACVMENVPFINGSPQNTFVPGLIDLAIKRNTLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSIVSYNHLGNNDGMNLSAPQTFRSKEISKSNVVDDMVNSNAILYEPGEHPDHVVVIKVILFSLSLPCLSNSIGCLCSLLLQYVPYVGDSKRAMDEYTSEIFMGGKSTIVLHNTCEDSLLAAPIILDLVLLAELSTRIQFKAEDEVCYMLVA	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g2741	481	Pfam	Myo-inositol-1-phosphate synthase	310	447	IPR013021	-
	Ssu5g2741	481	Gene3D	-	395	479	-	-
	Ssu5g2741	481	Gene3D	-	1	356	-	-
	Ssu5g2741	481	PANTHER	INOSITOL-3-PHOSPHATE SYNTHASE	409	475	-	-
	Ssu5g2741	481	PANTHER	INOSITOL-3-PHOSPHATE SYNTHASE	1	389	-	-
	Ssu5g2741	481	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	309	446	-	-
	Ssu5g2741	481	PIRSF	Myoinositol-ppht_synth	50	479	IPR002587	GO:0004512\|GO:0006021\|GO:0008654
	Ssu5g2741	481	PANTHER	MYO-INOSITOL-1 PHOSPHATE SYNTHASE	1	389	IPR002587	GO:0004512\|GO:0006021\|GO:0008654
	Ssu5g2741	481	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	4	470	IPR036291	-
	Ssu5g2741	481	Pfam	Myo-inositol-1-phosphate synthase	62	474	IPR002587	GO:0004512\|GO:0006021\|GO:0008654
	Ssu5g2741	481	PANTHER	MYO-INOSITOL-1 PHOSPHATE SYNTHASE	409	475	IPR002587	GO:0004512\|GO:0006021\|GO:0008654

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g2741	Ssu-Chr5	73077376	73080485	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g2741	K01858		-	gmx:100800820	867.07

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g2741	5	73077376	73080485	Ssu9g1692	9	53909985	53912698	PCT