Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2655 ATGAATCAGGATTTGGGAATCCCTGATATGTATCAGAGCAGCATTGGCGCACACCGCCTCGCATACCGCTCTCACATATCCAACCTCGTCAAAGCCGGTCTCATCAACCAAGCCATCCACCTGTTCGACCAAATGACCCAATCCGATTGCCGCGTCTTCAGCCTCGACTACAACCGCTTCATCGGCGTCCTCCTCCGCCACTCCCGCCTCCGCCTCGCCCACCACTACTACCGCCGCCACGTCGTCCCTCGCGGCTTCTCCCTCCTCCCCTTCACCTACTCCCGCTTCATCTCCGCCCTCTGCTCCGCCCCCTACAACCTCCCCCTCATCCACAACCTCCTCCTCGACATGGACGCATTGGGCTTTGTCCCCGACATTTGGGCCTTCAACATCCACCTCAACCTCCTCTGCCGCGAGAGTCGCTTAGAAACCGCCCTCGAACTGTTCCGCTCCATGCCTTCGAAAGGAAGAGAACCCGACGTCGTTTCCTACACTATTATCGTTGACGCGTTGTGCAAAGCTAAGCGGTTCGACGAGGCCGCCAGGGTTTGGCGTCGTTTGATTGAAAAGGGGCTGAGTCCTGATTGCAAGGCCTGTGTTGCTCTTGTTGTCGGGTTGTGCGGTGGGGGCCGCGTGGATTTGGCTTATGAGCTTCTTGTTGGTGTGATCAAGGGTGGGGTGAGGGTTTCTAGTTTGGTTTATAATGCTTTGATTGATGGGTTTTGTAGGATGGGGAGGGTTGATAAGGCCATGAAGATTAAGGCGTTTATGAGCAGGAACGGGTGTGTGCCGGATTTGGTTACTTATAACATACTGTTGAATTACTGTTGTGATGAGGGGATGGTGGATGAGGCGGTGAGGTTGGTGGAGACCATGGAGCGGAGCGGGGTGGAGCCGGATTTGTATAGTTATAACGAGCTGTTGAAGGGGTTTTGCAAGGCTAATATGGTGGATAGGGCTTATTTGTTGATGGTGGAGAGGATGCAGACCAAAGGGCTGTGTGATGTTGTTTCGTATAATACTGTTATCACGGCGTTCTGTAAGGGGCGGCGGACTAGGAGGGGTTATGAGTTGTTTGAGGAGATGTGTGGGAAGGGGATTAGGCCGGACATGGTGACGTTTAATATACTTATAGATGCGTTTCTGAGAGAAGGGAGTACCCATGTGGTTAAGAAGCTGCTCGATGAAATGACGAGGATGGGTATTATTCCTGATTGTATATTCTATACGGCAGTGCTTGATCATCTGTGCAAGACTGGGAAGGTTGATATGGCTCATAGTGTTTTTCGTGACATGGTGGAGAATGGGGTGAATCCAGATGTCATCTCGTACAATGCACTTGTAAATGGGTTTTGTAAGGCTTCTAGAGTTATGGATGCCATGCGGCTATATGATGAAATGCAGAGGAAAGCTTTGTACCCTGATGAGGTAACTTTCAAGTTGATAGTTGGAGGgcttataaaggaaaaaaagctTTCACTGGCCTGTAGGGTTTGGGatcaaatgatggagaaaggcttTACACTTGACAGACATCTTTCTGAGACTCTAGTCAATGCCATTCAATCCAGTGATGGTGCATGA 1584 0.4962 MNQDLGIPDMYQSSIGAHRLAYRSHISNLVKAGLINQAIHLFDQMTQSDCRVFSLDYNRFIGVLLRHSRLRLAHHYYRRHVVPRGFSLLPFTYSRFISALCSAPYNLPLIHNLLLDMDALGFVPDIWAFNIHLNLLCRESRLETALELFRSMPSKGREPDVVSYTIIVDALCKAKRFDEAARVWRRLIEKGLSPDCKACVALVVGLCGGGRVDLAYELLVGVIKGGVRVSSLVYNALIDGFCRMGRVDKAMKIKAFMSRNGCVPDLVTYNILLNYCCDEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAYLLMVERMQTKGLCDVVSYNTVITAFCKGRRTRRGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTRMGIIPDCIFYTAVLDHLCKTGKVDMAHSVFRDMVENGVNPDVISYNALVNGFCKASRVMDAMRLYDEMQRKALYPDEVTFKLIVGGLIKEKKLSLACRVWDQMMEKGFTLDRHLSETLVNAIQSSDGA 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2655 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Ssu5g2655 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Ssu5g2655 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Ssu5g2655 527 Pfam PPR repeat 477 507 IPR002885 -
Ssu5g2655 527 Pfam PPR repeat 26 50 IPR002885 -
Ssu5g2655 527 Gene3D Tetratricopeptide repeat domain 224 334 IPR011990 GO:0005515
Ssu5g2655 527 Gene3D Tetratricopeptide repeat domain 106 223 IPR011990 GO:0005515
Ssu5g2655 527 Gene3D Tetratricopeptide repeat domain 387 527 IPR011990 GO:0005515
Ssu5g2655 527 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 10 525 - -
Ssu5g2655 527 Pfam PPR repeat 232 253 IPR002885 -
Ssu5g2655 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Ssu5g2655 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 331 IPR002885 -
Ssu5g2655 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Ssu5g2655 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Ssu5g2655 527 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 10 525 - -
Ssu5g2655 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Ssu5g2655 527 Pfam PPR repeat family 124 173 IPR002885 -
Ssu5g2655 527 Pfam PPR repeat family 264 313 IPR002885 -
Ssu5g2655 527 Pfam PPR repeat family 335 382 IPR002885 -
Ssu5g2655 527 Pfam PPR repeat family 404 453 IPR002885 -
Ssu5g2655 527 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Ssu5g2655 527 TIGRFAM PPR: pentatricopeptide repeat domain 302 333 IPR002885 -
Ssu5g2655 527 TIGRFAM PPR: pentatricopeptide repeat domain 372 406 IPR002885 -
Ssu5g2655 527 TIGRFAM PPR: pentatricopeptide repeat domain 162 196 IPR002885 -
Ssu5g2655 527 TIGRFAM PPR: pentatricopeptide repeat domain 409 441 IPR002885 -
Ssu5g2655 527 TIGRFAM PPR: pentatricopeptide repeat domain 477 510 IPR002885 -
Ssu5g2655 527 TIGRFAM PPR: pentatricopeptide repeat domain 233 265 IPR002885 -
Ssu5g2655 527 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Ssu5g2655 527 TIGRFAM PPR: pentatricopeptide repeat domain 129 161 IPR002885 -
Ssu5g2655 527 TIGRFAM PPR: pentatricopeptide repeat domain 442 476 IPR002885 -
Ssu5g2655 527 Gene3D Tetratricopeptide repeat domain 10 105 IPR011990 GO:0005515
Ssu5g2655 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Ssu5g2655 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2655 261 524 Glycosyltransferase AT1G05670 31.321 3.60e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2655 - - gmx:100801230 926.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2655 5 71450833 71452416 Ssu5g2655 5 71450833 71452416 ECH