Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2642 ATGGATCCCTCTATTTCTCGTCCAGCTGTAGTAATCGATAATGGCTCCGGGTATACGAAGATGGGGTTTGCTGGTAATGTTGAGCCATGTTTTATTGTTCCGACAGTGGTTGCAGTCAATGAGTCGTTTCTGAATCAATCCAGGAGCTCTTCTAAAGGCAATTGGGTGGCCCAGCACAATGCTGGGGTTATGGCAGATCTTGATTTCTTCATTGGGGATGAGGCCCTTTCCAAGTCTCGATCCAGCAGCACTTACAATCTCAGCTACCCGATTCGGCATGGCCAGGTTGAGAATTGGGATGCCATGGAGCGCTTCTGGCAGCAGTGCATATTCAACTATTTAAGGTGTGATCCGGAGGATCACTATTTTCTCCTGACCGAGAGTCCGTTGACCTCACCTGAGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACTTTTAATGTGCCGGGACTTTACATTGCTGTGAATTCTGTGCTTGCTCTTGCAGCTGGCTACACAACATCTAAGTGTGAGATGACAGGAGTTGTAGTGGATGTTGGAGACGGGGCTACTCATGTTGTACCCGTTGCAGATGGCTATGTTATTGGTAGTAGCATCAAATCAATTCCTATTGCTGGAAAGGATGTTACTCTATTTGTGCAGCAGCTTATGCGGGAAAGAGGAGAAAATGTACCACCAGAAGACTCTTTTGAAGTGGCACGGAAAGTGAAGGAAATGCATTGCTACACCTGCTCTGACATTGTGAAGGAATTTAATAAGCATGACAAAGAACCAGCCAAGTATATCAAGCATTGGAGAGGCATTAAACCAAAGACAGGGGCACCATATTCCTGTGATATTGGCTATGAACGATTCCTTGGCCCTGAGATTTTCTTTAATCCTGAGATATATGGCAGCGACTTTACTACCCCTTTGCCAGTTGTAATAGACAAGTGCATTCAGTCTGCGCCAATTGACACAAGGAGATCATTATACAAGaATATTGTGTTGTCTGGTGGGTCAACCATTTTCAAGGATTTTCACAGGAGGTTTGAGATGTACCTTTATTTGTTGACAAATCTTAGATTATTTCTTGTCCTTGAGAAAGCAATGGAGAATGGATTGCATTCAGTGTCACGTTGGAACTTGGTTGTCTATTATGCCTCTTCGTCTGGCATTGATAACCAGAATTTTGTCCGCTTTTCCATATGA 1194 0.4414 MDPSISRPAVVIDNGSGYTKMGFAGNVEPCFIVPTVVAVNESFLNQSRSSSKGNWVAQHNAGVMADLDFFIGDEALSKSRSSSTYNLSYPIRHGQVENWDAMERFWQQCIFNYLRCDPEDHYFLLTESPLTSPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATHVVPVADGYVIGSSIKSIPIAGKDVTLFVQQLMRERGENVPPEDSFEVARKVKEMHCYTCSDIVKEFNKHDKEPAKYIKHWRGIKPKTGAPYSCDIGYERFLGPEIFFNPEIYGSDFTTPLPVVIDKCIQSAPIDTRRSLYKNIVLSGGSTIFKDFHRRFEMYLYLLTNLRLFLVLEKAMENGLHSVSRWNLVVYYASSSGIDNQNFVRFSI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2642 397 Pfam Actin 8 347 IPR004000 -
Ssu5g2642 397 Gene3D - 158 349 - -
Ssu5g2642 397 PANTHER ACTIN-RELATED PROTEIN 3-LIKE 7 378 - -
Ssu5g2642 397 SUPERFAMILY Actin-like ATPase domain 173 356 IPR043129 -
Ssu5g2642 397 CDD NBD_sugar-kinase_HSP70_actin 10 206 - -
Ssu5g2642 397 SMART actin_3 7 392 IPR004000 -
Ssu5g2642 397 Gene3D - 10 157 - -
Ssu5g2642 397 Gene3D Actin; Chain A, domain 4 205 303 - -
Ssu5g2642 397 SUPERFAMILY Actin-like ATPase domain 7 177 IPR043129 -
Ssu5g2642 397 PANTHER ACTIN 7 378 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2642 Ssu-Chr5 71340648 71344718 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g2642 9 345 Miscellaneous Gene Families AT2G42100 36.202 2.34e-63 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2642 K18584 - gmx:100780462 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2642 5 71340648 71344718 Ssu5g2642 5 71340648 71344718 ECH