Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2339 ATGGATCCAGACGCGTTGGCAAAGGCGTTCGTAGAGCACTACTACAGCACCTTCGACACGAACCGAGGAGGGTTAGCGAATCTGTACCAGGAGGGTTCTATGCTCACCTTCGAAGGCCAGAAGATCCAAGGCGCTTCCAACATCGTCGCCAAGCTCAATTCCCTCCCATTCCAGCAGTGCCACCACTCCATCTCCACCGTCGATTGCCAGCCCTCCGGCGTCAACGCCGGCATGCTCGTCTTCGTCAGCGGCAACCTCCAACTCGCCGGCGAACAGCACACCCTCAAGTTCAGCCAGATGTTCCATTTGATACCAACACCACAGGGAAGCTATTATGTGTTGAATGACATATTCCGTTTGAACTATGCATGA 372 0.543 MDPDALAKAFVEHYYSTFDTNRGGLANLYQEGSMLTFEGQKIQGASNIVAKLNSLPFQQCHHSISTVDCQPSGVNAGMLVFVSGNLQLAGEQHTLKFSQMFHLIPTPQGSYYVLNDIFRLNYA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2339 123 Gene3D - 1 123 - -
Ssu5g2339 123 PANTHER NUCLEAR TRANSPORT FACTOR 2 1 123 IPR045875 GO:0006913
Ssu5g2339 123 PANTHER NUCLEAR TRANSPORT FACTOR 2B 1 123 - -
Ssu5g2339 123 SUPERFAMILY NTF2-like 3 121 IPR032710 -
Ssu5g2339 123 CDD NTF2 2 122 IPR018222 -
Ssu5g2339 123 Pfam Nuclear transport factor 2 (NTF2) domain 7 120 IPR002075 -
Ssu5g2339 123 ProSiteProfiles Nuclear transport factor 2 domain profile. 6 120 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2339 Ssu-Chr5 66037048 66039609 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2339 - - gmx:100777334 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1828 9 55661921 55662712 Ssu5g2339 5 66037048 66039609 PCT