Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1900 ATGGCTTCAACCGCTTCCGAAGTTAACCAAGTACAATCCAACAACAGAACAAGTTTCACAAGCGTGAAAGCACTCACTGAATCACCAGAACTCACTTCCCTCCCACCCTCATACACCTACACCACCAACCCAGATGATGAATTAGTATCAGACCCAGATAAAGATGATCCAATACCCATCATTGACTATTCCCTCTTGGTCACTGGCACACCTGATCAACGGGCCAAGGCCATCCATGACTTAGGCAAGGCTTGTGAGGAGTGGGGCTTCTTCATGCTCATCAATCACTCCGTGTCAAGGAGCATCATGGAGAAGATGGTTGACGAAGTTTTTGCTTTCTTCAATCTTAAAGAGGAGGAGAAGCAAGAGTATGCAGGTAAGGATGTGATGGACCCAATAAGGTATGGCACCAGTTCCAATGTTTCAAGGGACAAAGTCTTATTGTGGAGGGATTTCCTTAAAATCGTGGTGCACCCAGAATTTCACTCACCTGACAAACCAGTTGGGTTCAGGGAGGCATCAGCAGAGTACAGTAGAAGAACCTGGAAAGTGGGAAAGGAACTACTCAAAGGAATATCAGAAAGCTTGGGATTGGAAGCCAATTACATAGAGGATACAATGAACCTAGATTCTGGTTTGCAAATGATAGCAGCAAATCTCTATCCACCTTGTCCACAACCTGAGCTTGCAATGGGAATACCCCCACATTCTGATCATGGCCTCTTGAACCTCCTCATGCAGAACGGGGTTAGTGGCCTTCAAGTGCTTCACAATGGCAAGTGGATCAGTGTCAGTTCCACTCCAAACTGCTTGTTAGTCTTTGTGTCTGATCACCTTGAGgTTGTGAGCAATGGCAAGTACAAGAGTGTATTACATCGAGCAGTTGTAAGTAACAAAGCTACAAGAATGTCCTTAGCGATAGTAATTGCACCATCCTTGGACACAGTGGTGGAACCAGCTAAGGAGCTGGTAGACAATCAAAGCAATCCAGCAGCGTACGTTGGGATGAAACATAGAGACTATTTGCAACTTCAGCGAAGCAACCGGCTTGATGGGAAGTCTGTGCTGGACAAAGTTAAAATCTGA 1086 0.4549 MASTASEVNQVQSNNRTSFTSVKALTESPELTSLPPSYTYTTNPDDELVSDPDKDDPIPIIDYSLLVTGTPDQRAKAIHDLGKACEEWGFFMLINHSVSRSIMEKMVDEVFAFFNLKEEEKQEYAGKDVMDPIRYGTSSNVSRDKVLLWRDFLKIVVHPEFHSPDKPVGFREASAEYSRRTWKVGKELLKGISESLGLEANYIEDTMNLDSGLQMIAANLYPPCPQPELAMGIPPHSDHGLLNLLMQNGVSGLQVLHNGKWISVSSTPNCLLVFVSDHLEVVSNGKYKSVLHRAVVSNKATRMSLAIVIAPSLDTVVEPAKELVDNQSNPAAYVGMKHRDYLQLQRSNRLDGKSVLDKVKI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1900 361 Pfam 2OG-Fe(II) oxygenase superfamily 215 309 IPR044861 -
Ssu5g1900 361 MobiDBLite consensus disorder prediction 1 46 - -
Ssu5g1900 361 Gene3D - 17 350 IPR027443 -
Ssu5g1900 361 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 211 311 IPR005123 -
Ssu5g1900 361 SUPERFAMILY Clavaminate synthase-like 30 353 - -
Ssu5g1900 361 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 361 - -
Ssu5g1900 361 MobiDBLite consensus disorder prediction 1 53 - -
Ssu5g1900 361 PANTHER FLAVONOL SYNTHASE/FLAVANONE 3-HYDROXYLASE 12 361 - -
Ssu5g1900 361 Pfam non-haem dioxygenase in morphine synthesis N-terminal 58 163 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1900 Ssu-Chr5 55839918 55841602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1900 44 361 Glycosyltransferase AT5G59530 35.347 1.48e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1900 - - gmx:100818482 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1900 5 55839918 55841602 Ssu5g1900 5 55839918 55841602 ECH