Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1839 ATGGCTTCGTCGGAGATCGAGGTGGTATCATCGGTCTCCAAGCCCAACGACCAGCCTCCTATCCTCGACGTCTTCACCGCCTCTGCTCACGGCGACTTTCACAAATTGAGAACCTTCGTCGAGCGAGACGGTGCCTCGGTCTCTGTTCCCGATGTTAATGGCTATTACCCTCTTCAGTGGGCGTCGCTTAACAACTTCCACGACATTGCGCACTATCTCATTCAGCATGGGGCGGATGTCAATGCTAAAGACAACATGCAACAAACGGCATTGCATTGGGGGGCGGTTCGCGGTTCAACTGCAGCTGCTGATGTGCTCGTGGAGAATGGTGCTAGGGTAGAAGCTGCAGACATAAATGGATACCGGGCAGTTCATGTTGCTGCACAATATGGACAGACAGCTTTCTTAAATCACATTGTAGTAAAGTACCATGCCGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCTGACACAATAAGGTTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATGGTTGTACACCGTTGCACTGGGCTGCATTAAGAGGAAATGCAGAGGCATGTGCTGTGCTTGTCCATGCAGGCACAAAGGAAGAATTGATGGTGAAGGACAATGCTGGACACACTCCTGTACAGCTTGCATATGATAAAGGTCATCGGCATGTCGCTTCTTTCCTTTCAAATCAACAACGTGCTCATAGCAACAACTACTGGAGAGGGAAACTTTGTAGTGGGATGGTGACAGATATTGGTTATGCTCCCATCTTATTGTGTATTATAATCTTTCTCAtgatcctcttcatcaactcaGTCGTTGCAGCTCCAAATCTTAAAAAGATTACTGCCGTTGTTGGACTTTGGGCGTGGACAGCACTTTCTCTGGCAGTTGGTGCCCTGATTATGTTCTATAGGTGTAGTAGTAAAGATCCAGGTTATATAAAACGTCCGGGTGACTTGGGTACTCAAAGTGATACAGAGGATCCTTTATTGAATATTGATCTGAATAGTTCCTCTGTTTGGATGGGAAATTGGTCCCAACTTTGCCCTACCTGCAAGATAATAAGACCTGTCCGATCTAAGCATTGTCCTACTTGTAAGCGCTGTGTGGAACAGTTCGACCACCATTGTCCATGGATATCTAACTGTGTTGGGAAGAGGAACAAAAgggatttctttatttttatctgccTGGGAACTTTGACTTCTTTCCTTTCTGCTGCCATTGCAGTTCAAAGAATTTGGACGTCTACACCAGCATTACTGGTAGGAGAAACATGGATCCATTATGTGTTAGTAAGACATCCAGGTTTAGTTGTGTTCTTGGTGATGGACGCTGTTGTTTTTGTTGCCACTACGACATTAACAATAACACAGGCTTCCATGATAGCTCGAAATGTGACCACAAACGAACTAGCAAATTCCTCCCGTTATGATTATCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATATAACCATGGTTGTCGGAAGAATTGTgctgacttcctttttctgggCTATACAAATGATGATGATATTGCTTGGCCTCCATTACAGCAGGTGGGATTTATGCAACTCGGAAAAGTGCAAATTTGA 1641 0.4339 MASSEIEVVSSVSKPNDQPPILDVFTASAHGDFHKLRTFVERDGASVSVPDVNGYYPLQWASLNNFHDIAHYLIQHGADVNAKDNMQQTALHWGAVRGSTAAADVLVENGARVEAADINGYRAVHVAAQYGQTAFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGNAEACAVLVHAGTKEELMVKDNAGHTPVQLAYDKGHRHVASFLSNQQRAHSNNYWRGKLCSGMVTDIGYAPILLCIIIFLMILFINSVVAAPNLKKITAVVGLWAWTALSLAVGALIMFYRCSSKDPGYIKRPGDLGTQSDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTLTSFLSAAIAVQRIWTSTPALLVGETWIHYVLVRHPGLVVFLVMDAVVFVATTTLTITQASMIARNVTTNELANSSRYDYLRGPDGRFRNPYNHGCRKNCADFLFLGYTNDDDIAWPPLQQVGFMQLGKVQI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1839 546 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Ssu5g1839 546 PANTHER PROTEIN S-ACYLTRANSFERASE 24 3 529 - -
Ssu5g1839 546 Gene3D - 140 254 IPR036770 -
Ssu5g1839 546 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Ssu5g1839 546 Pfam DHHC palmitoyltransferase 361 488 IPR001594 GO:0016409
Ssu5g1839 546 ProSiteProfiles Ankyrin repeat profile. 86 118 IPR002110 GO:0005515
Ssu5g1839 546 Pfam Ankyrin repeats (3 copies) 184 244 IPR002110 GO:0005515
Ssu5g1839 546 Pfam Ankyrin repeats (3 copies) 117 182 IPR002110 GO:0005515
Ssu5g1839 546 Pfam Ankyrin repeats (3 copies) 27 116 IPR002110 GO:0005515
Ssu5g1839 546 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Ssu5g1839 546 ProSiteProfiles Ankyrin repeat profile. 119 152 IPR002110 GO:0005515
Ssu5g1839 546 SUPERFAMILY Ankyrin repeat 24 243 IPR036770 -
Ssu5g1839 546 ProSiteProfiles DHHC domain profile. 361 411 - -
Ssu5g1839 546 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Ssu5g1839 546 SMART ANK_2a 53 82 IPR002110 GO:0005515
Ssu5g1839 546 SMART ANK_2a 221 250 IPR002110 GO:0005515
Ssu5g1839 546 SMART ANK_2a 86 115 IPR002110 GO:0005515
Ssu5g1839 546 SMART ANK_2a 186 215 IPR002110 GO:0005515
Ssu5g1839 546 SMART ANK_2a 119 149 IPR002110 GO:0005515
Ssu5g1839 546 SMART ANK_2a 153 182 IPR002110 GO:0005515
Ssu5g1839 546 PANTHER - 3 529 - -
Ssu5g1839 546 ProSiteProfiles Ankyrin repeat region circular profile. 186 210 - -
Ssu5g1839 546 ProSiteProfiles Ankyrin repeat region circular profile. 153 179 - -
Ssu5g1839 546 Gene3D - 7 139 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1839 Ssu-Chr5 54792049 54803230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1839 48 234 Miscellaneous Gene Families AT1G05640 28.497 5.43e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1839 K20032 - gmx:100798740 1017.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1839 5 54792049 54803230 Ssu5g1839 5 54792049 54803230 ECH