Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1835 ATGGAAGCACGTGCGGGAGCCAATCAGCGTATTGCAAGAATCTCTGCTCATCTTCAGCCTCCAAATTTCCAGGAAGGGAGTGATGTTCTTCTTAAGAGAGCTGAGTGCAGAGCAAAGGGTGGGGCACCTGGATTCAAAGTGGCAATTTTGGGGGCTGCTGGGGGAATTGGTCAACCCCTTGCTTTGCTGATGAAGATGAACCCATTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAACACCCCTGGTGTTACAGCTGATGTTAGTCACATGGACACTGGTGCTGTGGTTCGTAGCTTTCTGGGGCAGTCACAACTTGAGAGTGCACTCACTGGTATGGACTTGGTAATTATACCTGCTGGGGTGCCAAGGAAACCTGGGATGACAAGggatgatttatttaaaataaatgctgGAATTGTGAGGACCCTTTGTGAAGGAATCGCCAAGTGCTGCCCCAATGCAATTGTCAACTTGATCAGTAATCCAGTGAATTCCACAGTTGCTATTGCTGCAGAGGTTTTCAAGAAAACTGGTACATATGATCCAAAGCGACTACTGGGGGTCACAACCCTTGATGTTGTTAGGGCAAATACTTTTGTGGCAGAGGTACTTGGAGTTGATCCAAGAGAGGTTGATGTTCCAGTGGTGGGAGGTCATGCTGGGGTCACAATTTTGCCTCTTTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACTGAGTACCTGACAAATCGCATCCAAAATGGTGGAACTGAAGTTGTTGAGGCAAAAGCTGGGGCTGGTTCAGCAACACTATCAATGGCATATGCAGCTGCCAAGTTTGCTAACGCATGCCTCCGTGGCTTAAAAGGAGAAGCTGGGGTGGTGGAGTGTGCGTTTGTTGATTGTCAGGTTACGGAACTTCCATTCTTTGCAACCAAGGTACGTCTTGGTCGTGGTGGAGCAGAAGAGGTTTATCAAGTTGGTCCCCTGAACGAGTATGAAAGGATTGGGTTGGAAAAAGCAAAGAGAGAGTTAGCAGGAAGCATTCAGAAGGGTGTAGACTTCATCagaaaataa 1071 0.4631 MEARAGANQRIARISAHLQPPNFQEGSDVLLKRAECRAKGGAPGFKVAILGAAGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRSFLGQSQLESALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVAIAAEVFKKTGTYDPKRLLGVTTLDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFANACLRGLKGEAGVVECAFVDCQVTELPFFATKVRLGRGGAEEVYQVGPLNEYERIGLEKAKRELAGSIQKGVDFIRK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1835 356 CDD MDH_glyoxysomal_mitochondrial 45 354 IPR010097 GO:0006099|GO:0030060
Ssu5g1835 356 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 46 355 IPR010097 GO:0006099|GO:0030060
Ssu5g1835 356 Pfam lactate/malate dehydrogenase, NAD binding domain 46 188 IPR001236 GO:0016491
Ssu5g1835 356 ProSitePatterns Malate dehydrogenase active site signature. 189 201 IPR001252 GO:0006108|GO:0016615
Ssu5g1835 356 PANTHER MALATE DEHYDROGENASE 2, PEROXISOMAL 2 356 - -
Ssu5g1835 356 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 190 353 IPR022383 GO:0016616
Ssu5g1835 356 Gene3D - 190 356 IPR015955 GO:0003824|GO:0016616
Ssu5g1835 356 SUPERFAMILY LDH C-terminal domain-like 189 354 IPR015955 GO:0003824|GO:0016616
Ssu5g1835 356 Gene3D - 37 189 - -
Ssu5g1835 356 PIRSF Lac_mal_DH 44 353 IPR001557 GO:0016616|GO:0019752
Ssu5g1835 356 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 188 IPR036291 -
Ssu5g1835 356 PANTHER MALATE AND LACTATE DEHYDROGENASE 2 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1835 Ssu-Chr5 54735180 54737824 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1835 K00026 - gmx:100799793 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1835 5 54735180 54737824 Ssu5g1835 5 54735180 54737824 ECH