Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1832 ATGGCCACAAGGGAGGGTAACCCGCCAAGCGCAAAGAAGAGAGTCCCTCTCTTTCCTCTTCTGTCTCTTCTCTGCTTCACTTCCATCTTCCTCCTTCTTTCCCAGTTCAAAACCACCTCCACCCCTTCCACACCCTACTCCCTTCGCACCTTCCAAATCGACGACCGCCGCCGCGCTTCCTGCGACTACTCCGACGGAACATGGATCCACGACCCCGCGAGGACTCCGAGGTACGACAACACCTGCAAGGAGGTCTTCAAGGGCTGGAACTGCCTCTCCGCCAACAAATCCAACGCCCCACAACTCGCCACGTGGCGCTGGCGGCCCCGCCACTGCGATCTCCCCCAGTTCGACCCCGCCAAGTTCCTTCGCACTCACGCCCACACCGGCATTGTGCAGGGTTTGTTGGGGATTCGCTCAACAGGAACATGTTTGTCTCTCTTTTCTGCGCTCTTAAGAGTGTCTCCAACGGACACGTCAAGAAGTGGCGACCCGCCGGTGCTGACCGTGGATTCACCTTTCTCGCTTACAATCTCACCATCGCATATCACCGTACCAATCTTCTCGCTCGTTATGTTGCTACATGAGTCCATGGATTGCACAGTTTTTGTGTGTTGTAAATGGTCAGCTAGTGATCATGGTGGTGCCTTAGAAACTCTTGGATTCAGAGAGGGCTTTAGAGTTGATGTTGATATTCCAGAAAGCACATGGGTGCGGGCTCTAAGTTTCCAcgatattctaatttttaacacGGGGCACTGGTGGTGGGCCCCTTCAAAATTTGACCCTGTGAAGTCCCCTATGCTTTTCTTCAAGAATGGTCAGCCAGTAATCCCTCCATTACGTCCAGATCAAGGCCTGGATATGGTTTTGGGGCACATGATCCCGTATGTGGAGGAAAAAGCACGACCAGGTGCAGTCAAATTTTTCCGCACTCAATCACCCAGACATTTTGAAGGGGGAGACTGGGATCAGGGTGGTTCCTGTCAAAGGGATCGTCCTTTGTCGGTAGAGCAGGTAGAAGAACTTTTCTCTGTGAAGAATAATGGGACAAATGTGGAGGCTCGGCTGGTGAATGATCGCCTCTATAAGGCTCTTAAGGGGTCCGGTTTCATTGTTTTGGACATCACTCACTTGAGTGAGTTCAGGGCTGATGCCCACCCTGCTTCAGCTGGAGGGAAAAAACACGATGATTGCATGCACTGGTGCTTACCTGGAATTACAGATACCTGGAATGACTTGTTCATAGAGCTTCTGAATAGTAACAGGGGGAGAAGTTGA 1281 0.5129 MATREGNPPSAKKRVPLFPLLSLLCFTSIFLLLSQFKTTSTPSTPYSLRTFQIDDRRRASCDYSDGTWIHDPARTPRYDNTCKEVFKGWNCLSANKSNAPQLATWRWRPRHCDLPQFDPAKFLRTHAHTGIVQGLLGIRSTGTCLSLFSALLRVSPTDTSRSGDPPVLTVDSPFSLTISPSHITVPIFSLVMLLHESMDCTVFVCCKWSASDHGGALETLGFREGFRVDVDIPESTWVRALSFHDILIFNTGHWWWAPSKFDPVKSPMLFFKNGQPVIPPLRPDQGLDMVLGHMIPYVEEKARPGAVKFFRTQSPRHFEGGDWDQGGSCQRDRPLSVEQVEELFSVKNNGTNVEARLVNDRLYKALKGSGFIVLDITHLSEFRADAHPASAGGKKHDDCMHWCLPGITDTWNDLFIELLNSNRGRS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1832 426 Pfam PMR5 N terminal Domain 60 113 IPR025846 -
Ssu5g1832 426 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 10 422 IPR029962 GO:0016413
Ssu5g1832 426 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 13 10 422 IPR029968 -
Ssu5g1832 426 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 221 417 IPR026057 GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1832 Ssu-Chr5 54562759 54566576 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1832 - - gmx:100802467 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1832 5 54562759 54566576 Ssu5g1832 5 54562759 54566576 ECH