Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1133 ATGGAGCCCCCGAAGCCCGAAACGGAGCCCGAATCCCACCTCCCGAACGGCCACTCCACCCCCGCCCCGAATGGATCGGGATCGGAATCGCAGTCCCCGAAGGAACGCACCGCAGCGTCGTCCGGTAGCACAAAAAAGTCGGTGCGCTGGAGCCCCGAATTGGTTACCGAATCTACGTTCACGTCTTCCCCTCACGAATCGCGCTTCAATCCatacttttcttctttctctcaatCCTCCTCCCCCTCCTTCATGgAGACGGTGGTGACCGTTCGTAATGTGCTGGGAAGATGGGGTAGGAAGGTGGGAGATGCTACTAAGAAGGCTGAGAATCTCGCTGGAAACACGTGGCAGCACTTGAAAACAAGCCCTAGCTTTGCTGAAGCTGCTATGGGGAGAATTGCCCAGGGAACAAAGGTCCTCGCGGAAGGTGGATATGAGAAGATTTTCCTGAATACATTTGAGACAGTTCCGGAGGAACTGCTTCAGAATTCTTTTGCATGTTATCTATCCACGTCAGCTGGTCCAGTAATGGGAGTTTTGTATATATCCACGGCAAAGATTGCATATTGTAGCGACAATCCTATTTCCTATAAAACTGACAACCAAATGGAATGGAGCTATTACAAGGTAGTCATCCCATTACACGAGCTAAAAGCAGTGAATCCTTCATCAAACACGACCAATCCTGCTGAAAAGTACATCCAGGTGATGTCGGTCGACAACCATGAATTTTGGTTTATGGGCTTCTTGAACTATGAAGGTGCTGTGGAGTTCCTGCAAGAAGCTCTTCAAGCCGGCAAACAATTACAATCAGAAGCATAG 825 0.4873 MEPPKPETEPESHLPNGHSTPAPNGSGSESQSPKERTAASSGSTKKSVRWSPELVTESTFTSSPHESRFNPYFSSFSQSSSPSFMETVVTVRNVLGRWGRKVGDATKKAENLAGNTWQHLKTSPSFAEAAMGRIAQGTKVLAEGGYEKIFLNTFETVPEELLQNSFACYLSTSAGPVMGVLYISTAKIAYCSDNPISYKTDNQMEWSYYKVVIPLHELKAVNPSSNTTNPAEKYIQVMSVDNHEFWFMGFLNYEGAVEFLQEALQAGKQLQSEA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1133 274 Pfam GRAM domain 150 266 IPR004182 -
Ssu5g1133 274 PANTHER GEM-LIKE PROTEIN 3-RELATED 35 269 - -
Ssu5g1133 274 SMART gram2001c 148 225 IPR004182 -
Ssu5g1133 274 CDD PH-GRAM_GEM 159 265 - -
Ssu5g1133 274 PANTHER GEM-LIKE PROTEIN 2 35 269 IPR037848 -
Ssu5g1133 274 Gene3D - 146 266 IPR011993 -
Ssu5g1133 274 Coils Coil 272 274 - -
Ssu5g1133 274 MobiDBLite consensus disorder prediction 13 65 - -
Ssu5g1133 274 MobiDBLite consensus disorder prediction 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1133 Ssu-Chr5 36480753 36485985 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1133 - - gmx:100793162 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1133 5 36480753 36485985 Ssu5g1133 5 36480753 36485985 ECH