Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1132 ATGAAGTTTATGAAACTGGGATCTCGTCCAGATACCTTTTACACTGCAGAGTCTGTAAGGACAATCTCTTCTGAAGTTTCAAGTGACCTCATAATTCAAGTGAAAGGAACTAGATATCTTCTTCACAAGTTCCCCCTGCTGTCCAAATGTTTGAGCCTGCAAAGGCTATGCTCAGAGAGTTCTGAGTCTCCTCAGCACCAAATAGTCCAACTCCCTGATTTTCCAGGTGGGGTGGAAGCATTTGAGCTGTGTGCCAAGTTCTGCTATGGCATAACCATCACTGTCAGTGCTTACAACATTGTAACTGCGCGGTGTGCCGCCGAGTACTTGCAGATGACTGAGGATGTTGAGAAGGGGAATTTGATTTACAAGCTTGAGGTTTTCTTCAATTCTTGCATCCTTAATGGCTGGAAGGATTCCATTGTGACTCTACAAACCACCAAAGCATTGCCTTTGTGGTCAGAGGACTTGGCAATTCCCAGCAGATGCATTGAAGCAATTGCCTCAAAGGTCTTAAGTCACCCCTCAAAGGTGAGTTTGTCACATAGCCATTCCCGGAGGGTCAGGGATGATGTGTCTTCTTGCAACGGAACCGAAAGTCTGAGACACAAATCAACAAGCAAGGGATGGTGGGCTGAGGATTTAGCAGATTTGAGCATAGACTTATATTGGAGAACCATGATAGCTATCAAATCTGGTGGCAAGACACCCTCAAATCTCATTGGTGATGCATTGAAAATCTATGCATCTAGGTGGCTACCAAATATCAGGAAGAATGTGCATGTCAAGAGGGAGACTGAATCTGACTCAGATTCAGATTCAGCGAGTGAAGTAACTTCAAAGCATAGACTGCTTTTGGAATCAATAGTGAGCTTGCTTCCAGCAGAGAAAGGTGCTGTTTCTTGCAGCTTCCTTCTTAAACTCTTGAAGGCAGCCAATATTCTCAATGCTTCTGCTTCTTCAAAGGTGGAATTGGCTACAAGAGTAGGACTTCAATTGGAGGAAGCCACGGTTAATGATCTTCTAATACGCTCAGTGTCTAACACAAATGATATGATGTATGAAGTGGACTTGGTGATGATCATATTGGAACAATTTATGTTGCAAGGTCAGAGTCCACCAACCAGCCCTCCAAGATCAAGGTTGGCCATTGAAAGGAGAAGGTCTCGTTCGGCGGAGAATATTAACTTCGAGTTCCAAGAGAGTAGGAGGTCCTCCTCAGCTTCTCATAGCTCAAAACTGAAGGTGGCAAAGCTTGTGGATAGGTACCTTCAGGAGGTTGCCAGGGATGTGAATTTGCCTCTCTCAAAATTCATTGCTCTTGCTGAAACTATACCAGAATTTGCTAGACATGACCATGATGATCTGTACAGAGCTATTGACGTTTATCTCaagGCACATCCAGAACTCAGTAAGAGCGAAAGGAAGAGACTTTGTCGAATTCTAGACTGCAAAAAGCTGTCTATGGCAGCTTGCATGCATGCAGCACAGAATGAGCTACTTCCCCTAAGAGTTGTTGTCCAAGTTCTCTTTTTTGAGCAAGCTCGGGCAGCAGCAGCTGGTGGCAAAGTGACTGACATGCCAAGCAACCTCAAGGCATTGCTCACTGCTCATGGCATCGACCCATCAAAACACACAGCACCATTGAGCACCACAACAAGTATACATGCTGATGACAATTGGAGTGTTTCTGGATTCAAGTCACCAAAGTCAACTAGGAACCCAACTCTCAGGATGAAGCTAGCTGAGGATGACTTGGATGAAAATGTTGCTGTGCCCCGTGATGAAATTGGAAGAACTTCGAGATTTAAGGGTCTTCTTGCTCTTCCCACTCAGCCCAAAAGAATGTTCAGCAAGTTGTGGGCTACCAACAGAAGTGCCACTGAAAAGAATTGA 1896 0.4467 MKFMKLGSRPDTFYTAESVRTISSEVSSDLIIQVKGTRYLLHKFPLLSKCLSLQRLCSESSESPQHQIVQLPDFPGGVEAFELCAKFCYGITITVSAYNIVTARCAAEYLQMTEDVEKGNLIYKLEVFFNSCILNGWKDSIVTLQTTKALPLWSEDLAIPSRCIEAIASKVLSHPSKVSLSHSHSRRVRDDVSSCNGTESLRHKSTSKGWWAEDLADLSIDLYWRTMIAIKSGGKTPSNLIGDALKIYASRWLPNIRKNVHVKRETESDSDSDSASEVTSKHRLLLESIVSLLPAEKGAVSCSFLLKLLKAANILNASASSKVELATRVGLQLEEATVNDLLIRSVSNTNDMMYEVDLVMIILEQFMLQGQSPPTSPPRSRLAIERRRSRSAENINFEFQESRRSSSASHSSKLKVAKLVDRYLQEVARDVNLPLSKFIALAETIPEFARHDHDDLYRAIDVYLKAHPELSKSERKRLCRILDCKKLSMAACMHAAQNELLPLRVVVQVLFFEQARAAAAGGKVTDMPSNLKALLTAHGIDPSKHTAPLSTTTSIHADDNWSVSGFKSPKSTRNPTLRMKLAEDDLDENVAVPRDEIGRTSRFKGLLALPTQPKRMFSKLWATNRSATEKN 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1132 631 SUPERFAMILY POZ domain 22 115 IPR011333 -
Ssu5g1132 631 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 629 - -
Ssu5g1132 631 PANTHER OS12G0117600 PROTEIN 1 629 IPR043454 -
Ssu5g1132 631 Pfam NPH3 family 210 492 IPR027356 -
Ssu5g1132 631 Gene3D Potassium Channel Kv1.1; Chain A 15 118 IPR011333 -
Ssu5g1132 631 ProSiteProfiles NPH3 domain profile. 209 516 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1132 Ssu-Chr5 36328710 36331680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1132 26 540 EF-hand Containing Proteins AT3G44820 35.175 1.05e-92 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1132 - - gmx:100792829 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1132 5 36328710 36331680 Ssu5g1132 5 36328710 36331680 ECH