Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1107 ATGACGAAAACCACACCCCGCACTTATTCTCTCTCCAGGTTCTGCCTATTTAAAGGGGGCTATAGTTCAGAAAGAGGAGACAAGCAGAAGATGGAAACAACACTCGTGCGCTTTCTTTACCATTTGTCCATGGTAATGTGTTGGTGCTGTGGCAACATAGTGCGCGCTATTGAATTACCAAAGTACTCTATGATACTGTCTGAATCAGATTTTCAGATCAGACTCTACAATGAATCCTCATGGATGTCAGCCCGTGTTTCTGGAACTTCCTTCGAGCAGTCCTACAAAATTGGATTTcaaagGTTGTATCAATATATCCATGGTGCCAATTCGGATTCTTCAAAAATTGCATTTACCGCTCCAGTCTTAACGAGTGTCCCCTCGTCACCCCCAGGGGATGGCTATATTGTAAGAATGTTCGTATCGACTCGCTTTCAGGGGAAACCTCCGCTACCCAATGCTGAACTCAAGTTGGATATAGAGAAATGGAAAACTCGGTGCATTGCAGTTAGGAAGTTCAGTGGGTATGCGAAGGATGATAACATTAACAAAGAAATTGAAGCTCTTGTAACCACCCTAAACAAGCGCTCAGCGACAATACAAGATACGAGCTCCTATACCATTGCCAAGTACAATGCTTCCTCTCACAATACTACTGATCTTTTAAATGAAGTGTGGATAGAAGTGTCAGGACTCGGGACTGACTGCTGA 711 0.4332 MTKTTPRTYSLSRFCLFKGGYSSERGDKQKMETTLVRFLYHLSMVMCWCCGNIVRAIELPKYSMILSESDFQIRLYNESSWMSARVSGTSFEQSYKIGFQRLYQYIHGANSDSSKIAFTAPVLTSVPSSPPGDGYIVRMFVSTRFQGKPPLPNAELKLDIEKWKTRCIAVRKFSGYAKDDNINKEIEALVTTLNKRSATIQDTSSYTIAKYNASSHNTTDLLNEVWIEVSGLGTDC 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1107 236 Pfam SOUL heme-binding protein 58 228 IPR006917 -
Ssu5g1107 236 PANTHER HEME-BINDING PROTEIN-RELATED 27 234 IPR006917 -
Ssu5g1107 236 SUPERFAMILY Probable bacterial effector-binding domain 46 229 IPR011256 -
Ssu5g1107 236 Gene3D Regulatory factor, effector binding domain 56 232 IPR011256 -
Ssu5g1107 236 PANTHER SOUL HEME-BINDING PROTEIN-RELATED 27 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1107 Ssu-Chr5 35423615 35425528 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1107 - - gmx:100500604 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1107 5 35423615 35425528 Ssu5g1107 5 35423615 35425528 ECH