LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g1095	ATGGTAATAGTCGCATTATCCTCCTCCCTCCCCGGCGGGCGAAACCTGTTCTCCTCCTTACCATCCACGCCACCGCCCCCTTACCCCGCCGCCGCCGTCTCCGCCACTCCGCCGCCGCCGATCCCCATCCCGAAGTACCCCCCGCCCCGCAAATCCCAAACCCCGCCGCCGCCAGCCCCTCCAAACCCCGGCCTCAAGTACCACCGCCACACGAAGTACCACAAGCCCGTGACCCGCGGCGGCGTCATCGCCTCCGACGGCGCCGACCGGTCGGTGATAATCGGGGAGTCCGGCGTGTCGTACCTGCTTCCCGGCGCGCCGTTCGAGTTCCAGTTCAGCTACTCGGAGACGCCGAAGGCGAAGCCGCTGGCGATCCGGGAGCCGGCGTTCCTGCCGTTCGCGCCGCCCACGATGCCGAGGCCGTGGACGGGGAAGGCGCCGCTGAAGAGcaagacgaagaagaagaagaagattccgCTGTTCGACTCGTTCAACCCTCCGCCGCCTGGCACCAAGGGCGTGAAGCGCGTGGAGATGCCTGGGCCTTTCCCCATACGGCAGTTCCCGAAGGAGGGTAAGACAAGGGAAGAGATTCTTGGAGAGCCTCTCAAGAAGTGGGAGATACAGATGCTTGTTAAGCCCATGGCGTCTCACAATCGCCAGGTTAATCTTGGAAGGGATGGATTAACGCATAACATGCTGGAGTTGATACATTCGCATTGGAAGCGTCGTCGTGTCTGTAAAATTCGTTGTTTAGGTGTTCCAACTGTAGATATGAATAATGTTTGCCATCATATTGAGGAGAAAACAGGGGGGAAAATAATTCATCAAGTTGGTGGTATAGTTTATCTTTTCCGTGGCAGAAATTACAACTATAGTACTCGTCCACAGTATCCAGTGATGCTCTGGAAGCCAGCTGCTCCTGTTTACCCAAAACTTATACAAGATGCTCCAGGAGGATTAACGAAAGCTGAAGCTGATGAATTACGGATGAAGGGGAAAACCCTCTTACCAATATGTAAATTAGCCAAAAATGGAGTATATACGTCCCTTGTAAAGGATGTCAGAGATGCTTTTGAAGGAAgtattttggtgaaaattaaCTGTAAGGGATTGGATCCTAGTGATTACAAGAAATTAGGTGCCAAGCTTAAGGATTTGGTTCCTTGTGTGCTGTTGTCTTTTGATGATGAACAGATATTGATGTGGAGGGGCAAAGACTGGAAATCAAGGTACCCGCTTCCTCCTCCAGCTTTTACACCTTCAAAAGCTGGTATTACAGGGAATTCGGAAAATTCAGGTGAGACTGATGACAATCAATCTAAGCATGACGGTGACAATGTGGTGAACACAAGCCAAAAAATGCTGTCTCTGTGGAACCGTGCAATTGAGTCAAGCAAAGCTTTGTTGCTGGATGAGTTTAATCTTGGTCCTGATGCTCTCTTGGAGAAGGTAGAGGAATTTGAGGCTGTTTCACAGGCCTTGGAGCACTCCCATCCAGCATTTACTATGCCAAGTGAAAATGACGCTGAAGGTTCAACTGCAAACTTTGAAGATAGTTATTCTGGTGACGGCTTACCTAccgaagaggaagaagaagaggatgagGATGAAGAGGATTACGTTGACCACCATGATGACGAAGATGATGACTTGTATGATGCAGTGGACACATCAGCTCAACCCGGATCATTACCTATTGATATGATTGTCAAAAAGCTAAAACAAAGACCATTGgagtaa	1743	0.4877	MVIVALSSSLPGGRNLFSSLPSTPPPPYPAAAVSATPPPPIPIPKYPPPRKSQTPPPPAPPNPGLKYHRHTKYHKPVTRGGVIASDGADRSVIIGESGVSYLLPGAPFEFQFSYSETPKAKPLAIREPAFLPFAPPTMPRPWTGKAPLKSKTKKKKKIPLFDSFNPPPPGTKGVKRVEMPGPFPIRQFPKEGKTREEILGEPLKKWEIQMLVKPMASHNRQVNLGRDGLTHNMLELIHSHWKRRRVCKIRCLGVPTVDMNNVCHHIEEKTGGKIIHQVGGIVYLFRGRNYNYSTRPQYPVMLWKPAAPVYPKLIQDAPGGLTKAEADELRMKGKTLLPICKLAKNGVYTSLVKDVRDAFEGSILVKINCKGLDPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRGKDWKSRYPLPPPAFTPSKAGITGNSENSGETDDNQSKHDGDNVVNTSQKMLSLWNRAIESSKALLLDEFNLGPDALLEKVEEFEAVSQALEHSHPAFTMPSENDAEGSTANFEDSYSGDGLPTEEEEEEDEDEEDYVDHHDDEDDDLYDAVDTSAQPGSLPIDMIVKKLKQRPLE	580

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g1095	580	MobiDBLite	consensus disorder prediction	419	448	-	-
	Ssu5g1095	580	SUPERFAMILY	YhbY-like	321	413	IPR035920	-
	Ssu5g1095	580	MobiDBLite	consensus disorder prediction	507	521	-	-
	Ssu5g1095	580	SMART	CRS1_YhbY_2	321	404	IPR001890	GO:0003723
	Ssu5g1095	580	SMART	CRS1_YhbY_2	203	286	IPR001890	GO:0003723
	Ssu5g1095	580	PANTHER	CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC	10	576	-	-
	Ssu5g1095	580	SUPERFAMILY	YhbY-like	202	295	IPR035920	-
	Ssu5g1095	580	Gene3D	-	202	298	IPR035920	-
	Ssu5g1095	580	MobiDBLite	consensus disorder prediction	501	564	-	-
	Ssu5g1095	580	Pfam	CRS1 / YhbY (CRM) domain	205	286	IPR001890	GO:0003723
	Ssu5g1095	580	Pfam	CRS1 / YhbY (CRM) domain	321	404	IPR001890	GO:0003723
	Ssu5g1095	580	ProSiteProfiles	CRM domain profile.	201	297	IPR001890	GO:0003723
	Ssu5g1095	580	MobiDBLite	consensus disorder prediction	17	67	-	-
	Ssu5g1095	580	MobiDBLite	consensus disorder prediction	159	188	-	-
	Ssu5g1095	580	Gene3D	-	321	416	IPR035920	-
	Ssu5g1095	580	ProSiteProfiles	CRM domain profile.	319	415	IPR001890	GO:0003723
	Ssu5g1095	580	MobiDBLite	consensus disorder prediction	524	555	-	-
	Ssu5g1095	580	MobiDBLite	consensus disorder prediction	20	64	-	-
	Ssu5g1095	580	PANTHER	CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC	10	576	IPR044599	GO:0000373

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g1095	Ssu-Chr5	34673880	34687427	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g1095	-		-	gmx:100801953	898.271

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g1095	5	34673880	34687427	Ssu5g1095	5	34673880	34687427	ECH