Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1091 ATGGTCGGTGGTGTCCTTAATTCAAACCTGAAAAGGTTCGCACCCCTTCAACAAAATTTCCAAGTCTCACTCCCAGTGCTGTTTTCAACGCTGAAACCGTGGTGTTGGACGCAGAAGCCTCAACTACACTCCTTCATCCGAGCCATAGCAACTCTTCCACCAATCCCACCGACGCCACCGCACACGTTCGTTCCCCTTCGCAGCTTCAGCGACCGCGTCTACCTCAAGAACCGCGAAATCGACGCTTTCGTAAAACGCAGAAACCCGAACGCTGCGCTCGCGGTGTTCCGCGGCACGCCACCGCGCGACACCGTCACCTACAACTTGATGATTTCCGCGTTCCGCGAGCGACCGAGTCGCGCTCTTCGCTTCTACGCCGAAATGGGTTCGCTCGGAATAAGAGAAAGCGCAACCACGCTCGCCTCTGTCATGGCTGTCTGCACCGACGCCGCGTTTTTCAGAGAGGGCGTTCAGGTGCATTGCAGGGCGGTGAAGTTCGGGTTTTCATGCAACTTGTTCGTTGGCGGTGCACTCGCTGGGTTTTACGCGCACGTGGGGCTGTGCGGGGTGGCACTGGAGCTGTTTGATGAGTTGCCAGAGCGAAACTTGGCTGCGTGTAACGTGATGCTGCGTGGGTTGTGTGAACTGGGTCGCGTGAAAGTGGAGGACTTGCTGGGGTTTTACTCTCGGATGTGTTTTGAGGGTGTGGACCCGAATGGGGTTACGTTTTGTTATTTGCTTAGGGGGTGTGGTGGTCAGAGACGGTTGCGTGAAGGGGAGAGGATTCATGGGTGTGTTTTGAAGGTGGGTTTGGTGGAATCGAATGTTTTTGTTGCCAATGCTTTGGTGGATTTTTACTCTGCGTGTGGGTGTTTGGTCGGTGCAAGGAAGTGTTTTGAGGACATAGAGGATGAGGATGTTATTTCGTGGAACTCGTTGGTTTTTGTTTATGCGGAGAACGATTTGTTGTGTGAGGCTTTGGAGGTATTCAGTGTTATGCAAGTGTGGGGGCACAGGCCGTCCGTTCGTTCGTTGGTGGGTTTGTTGAATTTGTGCAGTAGAAGTGGAAAGCTTTGTTTTGGGAAGCAGGTTCATTGTCTCGTGATGAAGTTGGGTTTTGGTGAAGGGAGTGTGCACGTTCAGTCTGCTTTGATTGATATGTATGGAAAGTGCAGGGACATTGAGGGTTCCGTGGCTGTATTTGAAGGCCTTCCCGGGAGAACTTTGGAGTGTTTCAACTCATTGATGACCTCTTTGTGTCATTGTGACGCGGTTGATGATGTGGTtgaattgtttggtttgatggTCGATGAAGGTGTTGTGCCGGACGAAGTAACCTTATCAACCACACTGAAGGCGTTGTCGGTGTCTGCTTCAGCAAGCTTCATGGGTTCCCAGTTACTGCATTGTTATGCATTGAAGTCTGGATTTGGAGGAGATGCCGCAGTTGCATGCTCCCTCGTCGATGCATACTCGAGATGCGGGCATGTGGAACTTTCTCGTCGAATTTTCAAGAGTCTTCCTTCTCCAAATGTCATTTGCTTCACATCCATGATCGGTGCGTGTGCCCGAAATGGAATGGGGAAAGAAGGAATTGCATTGCTTCAAGCTATGATTGAGAGGGGACTAAAGCCAGATGAAGTCACCTTCTTGTGTGCATTAGCGGGTTGTAACCACACAGGACTAGTTGAGGAAGGAAGAGTGGTCTTTGACTCCATGAAATCTCTTCACGGGGTCGATCCAGATCGCCGCCATTTTTCATGCATGGTGGATCTTTTATGCCGTGCAGGACTTCTCCATGAAGCTGAAGAGTTGCTGCTACAGGCACCGGGAAAAGGAGACTGTTTTATGTGGAGCTCTTTGCTAAGAAGTTGCAGGGTCCACAAGAATGAAGAGGTTGGAACAAGAGCAGCACAAATGTTAGTTGAGCTAGATCCGGATGACCCTGCAGTGTGGTTGCAAGCTTCAAATTTTTATGCTGAAATTGGGAAATTTGATGAAGCAAGGCAAATCAGAGAGGTTGCTTTGGCAAGGAAGATGACTAGAGAGATTGGTCGTAGTTTAATTGAGATAAGACCGTGA 2082 0.4976 MVGGVLNSNLKRFAPLQQNFQVSLPVLFSTLKPWCWTQKPQLHSFIRAIATLPPIPPTPPHTFVPLRSFSDRVYLKNREIDAFVKRRNPNAALAVFRGTPPRDTVTYNLMISAFRERPSRALRFYAEMGSLGIRESATTLASVMAVCTDAAFFREGVQVHCRAVKFGFSCNLFVGGALAGFYAHVGLCGVALELFDELPERNLAACNVMLRGLCELGRVKVEDLLGFYSRMCFEGVDPNGVTFCYLLRGCGGQRRLREGERIHGCVLKVGLVESNVFVANALVDFYSACGCLVGARKCFEDIEDEDVISWNSLVFVYAENDLLCEALEVFSVMQVWGHRPSVRSLVGLLNLCSRSGKLCFGKQVHCLVMKLGFGEGSVHVQSALIDMYGKCRDIEGSVAVFEGLPGRTLECFNSLMTSLCHCDAVDDVVELFGLMVDEGVVPDEVTLSTTLKALSVSASASFMGSQLLHCYALKSGFGGDAAVACSLVDAYSRCGHVELSRRIFKSLPSPNVICFTSMIGACARNGMGKEGIALLQAMIERGLKPDEVTFLCALAGCNHTGLVEEGRVVFDSMKSLHGVDPDRRHFSCMVDLLCRAGLLHEAEELLLQAPGKGDCFMWSSLLRSCRVHKNEEVGTRAAQMLVELDPDDPAVWLQASNFYAEIGKFDEARQIREVALARKMTREIGRSLIEIRP 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1091 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 238 IPR002885 -
Ssu5g1091 693 Gene3D Tetratricopeptide repeat domain 373 462 IPR011990 GO:0005515
Ssu5g1091 693 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 67 457 - -
Ssu5g1091 693 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 224 691 - -
Ssu5g1091 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Ssu5g1091 693 Pfam PPR repeat family 202 250 IPR002885 -
Ssu5g1091 693 Pfam PPR repeat family 510 557 IPR002885 -
Ssu5g1091 693 Pfam PPR repeat family 411 454 IPR002885 -
Ssu5g1091 693 Gene3D Tetratricopeptide repeat domain 223 371 IPR011990 GO:0005515
Ssu5g1091 693 Gene3D Tetratricopeptide repeat domain 75 222 IPR011990 GO:0005515
Ssu5g1091 693 Gene3D Tetratricopeptide repeat domain 486 689 IPR011990 GO:0005515
Ssu5g1091 693 SUPERFAMILY TPR-like 556 679 IPR011990 GO:0005515
Ssu5g1091 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Ssu5g1091 693 Pfam PPR repeat 308 337 IPR002885 -
Ssu5g1091 693 Pfam PPR repeat 578 606 IPR002885 -
Ssu5g1091 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Ssu5g1091 693 TIGRFAM PPR: pentatricopeptide repeat domain 411 444 IPR002885 -
Ssu5g1091 693 TIGRFAM PPR: pentatricopeptide repeat domain 513 547 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1091 Ssu-Chr5 34608448 34610529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1091 75 691 Glycoside Hydrolase AT3G49170 29.730 1.00e-85 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1091 - - gmx:102669506 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1091 5 34608448 34610529 Ssu5g1091 5 34608448 34610529 ECH