Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1090 ATGGACAAATTCTTCTTGGTTTCCTTACTCGGTTTGCTCATAGCAGCTCATGGAGTTGCGGGAAGCATGATGTGTGACAACATTGGCATGTTTGAAGAACTTAAGAGCCTGGAGGCCTTGGACATAGAAGAAGAAACTGAAGTAGAACTTTCTGACATCCCTTCATGGAGAAGCGAGCGTGGTGGAAAAGTTCTTGTGAATATTGATAGCTTTGGTGCTGCTGGAGATGGAGAATCTGATGATACTGAGGCTTTACAAAAAGCATGGGGAGTTGCATGCTCTACCCCAAAATCTGTTTTGTTAATTCCTCAAGGACGCCGTTACTTAGTTAATGCAACAAGATTCAGGGGGCCTTGTGCAGACAAGCTAATCATCCAGATTGATGGAACATTGGTTGCACCAGATGAGCCTAAGAACTGGGATCCAAATCTACCACGGGTTTGGcttgatttttctaaattagaTAAAGCTGTTTTTCAAGGCTCAGGAGTTATTGATGGCTCAGGCAGCAAATGGTGGGCAGCGTCTTGCAAAAAGAACAagtcaaatCCTTGCAAAGGTGCACCAACAGCCTTAACCATTGATACAAGTACATCCATAAAGGTGAAAGGACTAACAATCCAGAATAGCCAACAGATGCATTTTACCATATCACGATGTGATTCTGTTAGAATTAGTGACGTGAAAGTGTCAGCACCTGGAGACAGCCCAAACACTGACGGAATTCATATTAGTGAATCAACAAATGTCATAATCCAAGACAGCAAAATTGGAACAGGGGATGATTGCATATCAATTGTCAATGCTAGCTCTAATATCAAAATGAAGAGAATTTATTGTGGACCAGGACATGGAATCAGcaTTGGAAGCCTTGGAAAAGACAACTCAACTGGCATAGTCACGAAAGTGATTTTGGATACAGCGGTTCTTAGGGAGACTACCAACGGTGTCAGAATTAAGACTTGGCAGGGAGGCTCTGGATATGTCCGAGGGGTACGTTTTCAGAATGTGAGGGTGGAAAATGTATCCAACCCCATTATCATAGACCAATTTTACTGTGATTCACCAAGCACTTGTCAAAACCAGACATCGGCAGTGGACATAAGCGAGGTGATGTACCAGAACATAAGTGGCACTACAATGAGTGCTAAGGCCATTAAATTTGATTGCAGTGACACAGTTCCCTGCAACAACTTAGTCCTTAGCAGTGTGGACTTAGAGAAACAAGATGGCACGGTGGAAACATATTGCCACTCAGCCCAAGGTTTTCCCTATGGGGTGGTGCACCCTTCTGCTGATTGCCTTAATTCCAACGACAAAATCTCTCAAGTTGCAGAATCAACTATAGAGGAGGATATTCGTCACACTGAACTATAA 1377 0.4248 MDKFFLVSLLGLLIAAHGVAGSMMCDNIGMFEELKSLEALDIEEETEVELSDIPSWRSERGGKVLVNIDSFGAAGDGESDDTEALQKAWGVACSTPKSVLLIPQGRRYLVNATRFRGPCADKLIIQIDGTLVAPDEPKNWDPNLPRVWLDFSKLDKAVFQGSGVIDGSGSKWWAASCKKNKSNPCKGAPTALTIDTSTSIKVKGLTIQNSQQMHFTISRCDSVRISDVKVSAPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSLGKDNSTGIVTKVILDTAVLRETTNGVRIKTWQGGSGYVRGVRFQNVRVENVSNPIIIDQFYCDSPSTCQNQTSAVDISEVMYQNISGTTMSAKAIKFDCSDTVPCNNLVLSSVDLEKQDGTVETYCHSAQGFPYGVVHPSADCLNSNDKISQVAESTIEEDIRHTEL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1090 458 SMART pbh1 270 290 IPR006626 -
Ssu5g1090 458 SMART pbh1 329 350 IPR006626 -
Ssu5g1090 458 SMART pbh1 247 268 IPR006626 -
Ssu5g1090 458 SMART pbh1 220 246 IPR006626 -
Ssu5g1090 458 Gene3D - 56 457 IPR012334 -
Ssu5g1090 458 PANTHER BNAA08G20470D PROTEIN 2 444 - -
Ssu5g1090 458 SUPERFAMILY Pectin lyase-like 64 435 IPR011050 -
Ssu5g1090 458 PANTHER - 2 444 - -
Ssu5g1090 458 Pfam Glycosyl hydrolases family 28 97 417 IPR000743 GO:0004650|GO:0005975
Ssu5g1090 458 ProSitePatterns Polygalacturonase active site. 277 290 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1090 Ssu-Chr5 34598976 34606088 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1090 54 458 Glycoside Hydrolase AT1G23460 72.973 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1090 - - gmx:100804067 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1090 5 34598976 34606088 Ssu5g1090 5 34598976 34606088 ECH