Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1070 aTGCTCAACATGAACGCCCTCTTTCTCTTTATCCTTCTTTCAACGCTCACTGTTGGTTTCGCTGGTCGCCACTTACCAGACAAAAACCCGTTCACCCCAAAGGCTTACGTGGCGCGCTATTGGGACAAACACGTCAGCAACAGCTTGCCAAAGCCATCGTTCCTTCTTTCCAAGGCCTCCCCACTGAGCGCCACCGACTCGGCGTCGTTCTCCAAGCTTGCCGCCACCAACATCCTCTCCACTCGGTTGCCGGAGTTCTGCTCCGCCGCACACCTCCTCTGCTTCCCGGAGGTGCGACCCAGCCTCGAGAAACACACCGAAGACGTAGGTTTCCAAACGTACAACGACGGCCAGAACTTCACCAACTACGGAACGAGTCGACCCGGCGGAATCGACTCGTTCAAAAACTACTCCAACAGCTTCCTCAGCATTCCCGTGAACGATTTCCGGCGGTACAGCAGCCGCTCCGCCGGCCACGTGGACAGCTTCGTCAACTACGCAAACGAAACCAACTTCGCCGACGAGAGTTTCCACACCTACGGCACCAACGCAGCCGGGGGCTCCGGCGAGTTCAAACAGTACGCGGGCGATTCAAACGTCCCAGACCTACGATTCACCACCTACTCCGACAGCACCGGCGGGAGGATGCAATCGTTTTCGGCCTACAGCGAGGCGGGCAACGCCGGCGGCCAGACTTTCAGGAGCTACGGCAAGAACTCCGCCGGCGCGGCGAACGAGTTCACCCGCTACGGGACAAACGCCAACGTTGCCTCCTCTAGTTTCACGAACTACGGCAAGGGAGGCGCGGGTCCCAACGACACGTTCGCGAACTACGGCGTTAACATGAACGTCCCCGAAGAGAACTTCAAGAGCTACGCAGACGGAACCGTTGGTGGGTCCGAGAGTTTTTCAAACTACAGGGACGGGTCTAACGTGGGTGACGACTCGTTCGAATCGTATGCTAAGAACACGAAAGAAGGGAGCCAAGTGGATTTCAATAACTACGGGAATTCCGCCAACCCAGGTACGGACACTTTCATAGGGTACGCTAAAGGAGCCGAAGGGGATCACAAGGTGGGTTTCACGCGTTACGGCGTTAACACTAACACTACGTTTAAGGATTACGCCAAAGAGGGCGTCTCCTTCGCCAGTTACAACACCTCTGTTAGTGGCAGTCTGGTAAAAAGGTGGGTTGAACCCGGTAAATTCTTTCGCGAGAAGATGCTAAAAGAAGGAACCGTTATGCCGCTGCCAGATATAAGGGATAAAATGCCGCAAAGGTCGTTCTTGCCCCGCTCCATTTTGTCCAAATTGCCCTTCTCGTCTTCTAAGGTTGACGAGTTGAAGCGCGTGTTCAAGGTGTCTGATAACTCCTCTATGGACAAGATGATCATGGACTCGTTGGGTGAGTGCGAGAGAGCGCCCAGCGTGGGCGAGACCAAGCGCTGCGTGGGCTCCGTTGAAGATATGATTGATTTTGCAACCTCCGTTTTGGGCCATAATGTCGCGGTTTGGACCACGGAGAATGTAAATGGGTTTAATAAAAACGTTATGGTGGGTCGGGTCAAAGGGATGAACGGTGGGAAAGTGACCAAATCGGTGTCGTGCCATCAGAGCTTGTTCCCATACTTGCTTTACTACTGCCACTCCGTCCCTAAGGTTCGGGTCTACGAAGCAGATCTTTTGGACCCGGAATCAAAGGCCAAGTTTAACCACGGTGTTGCTATTTGTCACTTGGACACCACTGCATGGAGCCCCACCCACGGTGCATTCTTGTCTCTTGGCTCGGCTCCGGGTCGGATTGAAGTGTGCCATTGGATCTTTGAGAGTGACATGACTTGGACTACTGCTGATTGA 1857 0.5423 MLNMNALFLFILLSTLTVGFAGRHLPDKNPFTPKAYVARYWDKHVSNSLPKPSFLLSKASPLSATDSASFSKLAATNILSTRLPEFCSAAHLLCFPEVRPSLEKHTEDVGFQTYNDGQNFTNYGTSRPGGIDSFKNYSNSFLSIPVNDFRRYSSRSAGHVDSFVNYANETNFADESFHTYGTNAAGGSGEFKQYAGDSNVPDLRFTTYSDSTGGRMQSFSAYSEAGNAGGQTFRSYGKNSAGAANEFTRYGTNANVASSSFTNYGKGGAGPNDTFANYGVNMNVPEENFKSYADGTVGGSESFSNYRDGSNVGDDSFESYAKNTKEGSQVDFNNYGNSANPGTDTFIGYAKGAEGDHKVGFTRYGVNTNTTFKDYAKEGVSFASYNTSVSGSLVKRWVEPGKFFREKMLKEGTVMPLPDIRDKMPQRSFLPRSILSKLPFSSSKVDELKRVFKVSDNSSMDKMIMDSLGECERAPSVGETKRCVGSVEDMIDFATSVLGHNVAVWTTENVNGFNKNVMVGRVKGMNGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDPESKAKFNHGVAICHLDTTAWSPTHGAFLSLGSAPGRIEVCHWIFESDMTWTTAD 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1070 618 ProSiteProfiles BURP domain profile. 403 617 IPR004873 -
Ssu5g1070 618 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 6 618 - -
Ssu5g1070 618 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 6 618 - -
Ssu5g1070 618 Pfam BURP domain 403 615 IPR004873 -
Ssu5g1070 618 SMART BURP_2 401 617 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1070 Ssu-Chr5 33808086 33810031 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1070 - - var:108321369 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1070 5 33808086 33810031 Ssu5g1070 5 33808086 33810031 ECH