Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1065 ATGGAGGAACATCAACAACAACAGCAGCAAGGTCCTCTCCCCATTGACGACTGGAGCCGACTCCTCGACAGCCACTCGCCGCCGCGGGAAGTCGTCGTCGTGCCGTCCTCCGCCATGGCCTCCGATCAGTCCTCCGCCGACGACCTCGACGCTTACACGGATCACAAGCTCAAGGAATCGATTCAGAGCAAGAAGAAAACCCTCGACAGCTTCGGCAAGCATTTGCCCGACGCTGGTGCCAAGCTTCGCGCCACCATCGACCGCTACGAACAAGAACTTAGTCGTCGTCGGGAACTCAACCGCCTTCGCCAGGAAGTTGATGAGGACCTTCTGCCGCAGCCAGGACAAGCTACAAGCTCAAGTGCTGTTAGTGAGgGTGTGTCTAATGACTTGAGAGAAGAGAATTTGTCATCTCAAGCTCAGCCACTATCTTCTTTTACATCTtgctttgttaaaaaaatggaagataatACTAATTGTACAGCTGATGATGCATTTAGAAAAGAGATGTCACATTTCAAACTTTGTGACAACCAGAAAAAACAAGACAATGGAGAGcctagaagaagaaagagactTCGATCATCATCAAGACAATTGCCGTTTCAATGCCCTAGTAAACTTTCCAAACGTGATAATTTTAGGGGTGATAAAACTTGCAGAGGAACTTCCACTGTCTCTCTGCGGAATATTGGGAGAAATCGGTCAAGATGCTACCCAAAAGTGAAGGATGCTTCTCAGGCAGTTCAATTAGATGGCTTAAGGTCCAGGAAGGGTCAGCCCATTGTTCttgatgttgatgatgatgatgatgaagctCATATTGTGgagaaaacagaaaacaaatttGCTGAGTACCTGAAAGAAGCTAAGATCTATTTTCCATCAAGAGATGATCCAGAATGTGTTGAAATTTGTTACACAGACACAAATTGCCTTGCCCCTGAAGGCTATTTAACATCAACTATTATGAACTTCTACATTCAATATTTGCAGCAGCAAGCATTGCTGACAAATAGATCGTTATCTGACTACCATTTTTTCAATACATATTTCTACAAGAAGCTTAAAGAAGCTGTCTCCTACAAGCAAAGTGATAGAGAGATGATCTTTGCAAAGTTCAGAAGATGGTGGAAaggtgtaaatatttttcagaAGGCATATGTTTTGATTCCAATACACGAGGACCTTCACTGGAGCTTGATCATTATTTGTATCCCAGACAAAGAAGATGAATCAGGGCCAATTATACTGCATTTGGATTCTTTGGGTCTTCACTCTAGTAAATCggtttttgataatattaaaagctatttgattgaagaaaagaaCTACATGGATCGAGAAGGTGTGTCGTCAGATGTTTTGATTGCAGACAGAATATGGAAGTGCCTTCCTCGTAGAATTGAATCTCAAATCATTGCGGTTCCCCAACAGAAGAATGAGTATGACTGTGGTCTTTTTGTATTGTACTTCATTGAGCGTTTCATGGAGGAGGCACCCGAAAGACTGAGAAGGAATGATTTAGCTATGTTTGGAAAGCGATGGTTCAAACCTGAAGAGGCATCCAATTTGAGAGTGAAAATCCGTAAATTGCTTGTAGAAAAATTACAGAATTCAATCAGCGATAATTGTAActcagaatcttctccttcatCTTCTGCTGGCCCTGCAAATGATTGTGTTGAGACACCCGAGGATTCTGTGACCCAACATATGGCAACATGA 1728 0.3958 MEEHQQQQQQGPLPIDDWSRLLDSHSPPREVVVVPSSAMASDQSSADDLDAYTDHKLKESIQSKKKTLDSFGKHLPDAGAKLRATIDRYEQELSRRRELNRLRQEVDEDLLPQPGQATSSSAVSEGVSNDLREENLSSQAQPLSSFTSCFVKKMEDNTNCTADDAFRKEMSHFKLCDNQKKQDNGEPRRRKRLRSSSRQLPFQCPSKLSKRDNFRGDKTCRGTSTVSLRNIGRNRSRCYPKVKDASQAVQLDGLRSRKGQPIVLDVDDDDDEAHIVEKTENKFAEYLKEAKIYFPSRDDPECVEICYTDTNCLAPEGYLTSTIMNFYIQYLQQQALLTNRSLSDYHFFNTYFYKKLKEAVSYKQSDREMIFAKFRRWWKGVNIFQKAYVLIPIHEDLHWSLIIICIPDKEDESGPIILHLDSLGLHSSKSVFDNIKSYLIEEKNYMDREGVSSDVLIADRIWKCLPRRIESQIIAVPQQKNEYDCGLFVLYFIERFMEEAPERLRRNDLAMFGKRWFKPEEASNLRVKIRKLLVEKLQNSISDNCNSESSPSSSAGPANDCVETPEDSVTQHMAT 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1065 575 Coils Coil 89 109 - -
Ssu5g1065 575 MobiDBLite consensus disorder prediction 542 575 - -
Ssu5g1065 575 Pfam Ulp1 protease family, C-terminal catalytic domain 318 521 IPR003653 GO:0006508|GO:0008234
Ssu5g1065 575 MobiDBLite consensus disorder prediction 105 139 - -
Ssu5g1065 575 Gene3D - 294 534 - -
Ssu5g1065 575 PANTHER UBIQUITIN-LIKE PROTEASE 4 47 555 - -
Ssu5g1065 575 MobiDBLite consensus disorder prediction 176 190 - -
Ssu5g1065 575 MobiDBLite consensus disorder prediction 1 28 - -
Ssu5g1065 575 Gene3D - 345 473 - -
Ssu5g1065 575 PANTHER UBIQUITIN-LIKE PROTEASE 4-RELATED 47 555 - -
Ssu5g1065 575 SUPERFAMILY Cysteine proteinases 294 535 IPR038765 -
Ssu5g1065 575 MobiDBLite consensus disorder prediction 176 201 - -
Ssu5g1065 575 ProSiteProfiles Ubiquitin-like protease family profile. 303 496 IPR003653 GO:0006508|GO:0008234
Ssu5g1065 575 MobiDBLite consensus disorder prediction 113 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1065 Ssu-Chr5 33609193 33627180 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1065 K16287 - gmx:100790705 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1065 5 33609193 33627180 Ssu5g1065 5 33609193 33627180 ECH