Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1063 ATGGCACTTTGGCAACAAAAGCTAGGCTTCTCATGTCTACTAATCCTTTGCTTAGCCACTGTGGTTTCTCCACACAGCAGGCCTTATACAACTCCAAGTGTCACACGCTTGACGGATTCTTTTCCTCGTGTCCCAGTTGATCGTGCTTTTTCTAACGCTTTTGGGGCCTCAAATATCCAGTTTCTCAGTAATGGGTCCACGGCCACACTGGCTCTCGACAAAATCTCAGGCTCTGGCTTGGTATCACAAAGCAGATACTACTATGGATTTTTCAGTGCTGCAATCAAATTACCTTCTGGTTTGTCACCTGGAGTTGTAGTTGCTTTTTATTTGTCTAATGCAGACAAATTCCCTCACAACCATGATGAGATAGATATTGAACTGCTTGGTCATGATAAGAGAAATAGCTGGGTTATTCAAACAAATATCTATGCCAATGGAAGTGTCAGCACAGGTAGAGAAGAGAAATTCTATTTCTGGTTCGACCCAACACAGCAGTACCATTATTACAGCATCTTGTGGAACAGTTATCACACAGTGTTCTTAGTGGACAATGTTCCAGTGAGGGAATTCATACACAGCAACACATATCCTTCTATTTATCCATCAAAGCCAATGTCAGTGTATGCCACAATATGGGATGGTTCAGAATGGGCTACTCATGGAGGCAAATACCCAGTTAACTATAAGTATGCACCATTTGTTGTTTCATTTGCCCAAATAGAACTGAGCGGCTGCATATCTGACCCCACAGCACCAGTTTCTTCATGCTCTAAGGTCAATCCTTCAGGCCTAGATCCAGTTAATGGACCAGAGTTTACTAAGCTATCACAGCAGCAGATAGCAGCTATGGATTGGGCAAGAAGGAAACTCATGTTTTACTCTTACTGCAATGACAAATCCAGATTCAAAGTCCTGCCACCAGAATgccattaa 936 0.4231 MALWQQKLGFSCLLILCLATVVSPHSRPYTTPSVTRLTDSFPRVPVDRAFSNAFGASNIQFLSNGSTATLALDKISGSGLVSQSRYYYGFFSAAIKLPSGLSPGVVVAFYLSNADKFPHNHDEIDIELLGHDKRNSWVIQTNIYANGSVSTGREEKFYFWFDPTQQYHYYSILWNSYHTVFLVDNVPVREFIHSNTYPSIYPSKPMSVYATIWDGSEWATHGGKYPVNYKYAPFVVSFAQIELSGCISDPTAPVSSCSKVNPSGLDPVNGPEFTKLSQQQIAAMDWARRKLMFYSYCNDKSRFKVLPPECH 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1063 311 SUPERFAMILY Concanavalin A-like lectins/glucanases 50 310 IPR013320 -
Ssu5g1063 311 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 39 238 IPR000757 GO:0004553|GO:0005975
Ssu5g1063 311 Gene3D - 30 310 - -
Ssu5g1063 311 Pfam Glycosyl hydrolases family 16 53 230 IPR000757 GO:0004553|GO:0005975
Ssu5g1063 311 PIRSF EndGlu_transf 8 311 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu5g1063 311 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 311 IPR044791 GO:0004553
Ssu5g1063 311 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 274 310 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Ssu5g1063 311 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 2 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1063 Ssu-Chr5 33564821 33566324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1063 3 311 Glycoside Hydrolase AT1G10550 61.981 7.51e-146 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1063 K08235 - gmx:100778993 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1063 5 33564821 33566324 Ssu5g1063 5 33564821 33566324 ECH