Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1055 ATGGGCAAGCACCTTCTCCTACTGGCTCTCACTCTTTACCTCCTATTCGCCACTCTCTCTGTCTCAGCTGCACCTTCCACCACTTCCCCTGCAAGAATTGTTAATGGGTTTCTCTCCAATGCCGTGCCTGCTTTCACCAAATGGGTGTGGTCACTCAAGGCCACCACCAAAACGGCGGTTTCGAGCAGGTCGATGATGAAGTTCGAGAGTGGGTACAGTGTGGAGACTGTGTTCGATGGAAGCAAGCTTGGGATCGAGCCTTATGCTGTGGAGGTGTTGCCCAATGGGGAGCTTCTCATTCTTGATTCGGCTAATAGTAACATTTATAGGATTTCGTCCTCGCTTTCTTTGTACAGCAGACCCAAGCTGGTGGCAGGGTCAGCTGAAGGATATTCTGGACATGTTGATGGGAAGCTCAGGGAGGCTAGGATGAACCACCCAAAAGGTATCACTGTTGATGACCGAGGAAATATTTACGTTGCAGATACTACGAATATGGCAATTAGGAAAATTAGTGATTCAGGGGTCACGACAATTGCTGGAGGAAAATGGAGCCGTGGAGGGGGCCATGTTGATGGACCAAGTGAAGAAGCTAAATTTTCTGATGACTTTGATGTGGTTTATGTTGGAAGTAGTTGTTCATTACTCATCATAGACAGAGGAAACCGAGCCATCAGGGAGATCCAACTCCACTTTGATGATTGTGCCTATCAATATGGCAGTGGATTCCCACTTGGGATTGCAACGCTTATTGGGGCTGGCTTCTTTGGTTATATGCTGGCATTACTGCAGCGTAGGCTCAGTACAATTGTAGCATCCCAGGAAGTTCAGGTTCCAGTAACGGTAACATCTTCGGTTCCTCCAAGTCCATATCAAAAGCCCATGAAATCTGTCAGGCCTCCTTTAATTCCCTCAGAATATGAACCTGACAAGCAGGAAGAAGGTTTCTTTGGATCCCTCGGGAAGCTTCTCGCCAATGCTGGTGCATCAATGGTGGAGATTATGGGAGGATTATTTCCTTCTTTCAGAAGAAGATCACCGAGCTACCAATTTCAAAGACAACCGCTGCTCCAGCAACCTCAGAAACAAGTAAACGCTTGGCCGGGGCAGGAAAGTTTCGTGATCCCCGACGAGGATGAGCCCCCTTCTATCGACACAAGAGCCCCGACCCCTCGAAAAACCTATCCTTTCATGTCCAAGGATGCGGAGAAAATGCAACAACTGCGGCAAAGTCGAGCATTCTATAGTGGATGGGATGGAGATATCCAGCAGCAACAGCATCACaatcagcaacaacaacaacagcaacagaaACACCATCATCGCCATCAGTACCATTCATCGATCCCCCACACATACTATGAGCAGAGCCATGAGACAACCAATGAAATAGTGTTTGGTGCAGTGCAGGAACAGGATAAGAAGCAGGAGTCTGTGGTCATCAAGCCTGTGGATTATGGGGAGTCACTGTATGAACATCACAATATTAGGTCTAGAATGAGTTCCATGGGTTTTGCCCACAGGTACTGA 1530 0.4699 MGKHLLLLALTLYLLFATLSVSAAPSTTSPARIVNGFLSNAVPAFTKWVWSLKATTKTAVSSRSMMKFESGYSVETVFDGSKLGIEPYAVEVLPNGELLILDSANSNIYRISSSLSLYSRPKLVAGSAEGYSGHVDGKLREARMNHPKGITVDDRGNIYVADTTNMAIRKISDSGVTTIAGGKWSRGGGHVDGPSEEAKFSDDFDVVYVGSSCSLLIIDRGNRAIREIQLHFDDCAYQYGSGFPLGIATLIGAGFFGYMLALLQRRLSTIVASQEVQVPVTVTSSVPPSPYQKPMKSVRPPLIPSEYEPDKQEEGFFGSLGKLLANAGASMVEIMGGLFPSFRRRSPSYQFQRQPLLQQPQKQVNAWPGQESFVIPDEDEPPSIDTRAPTPRKTYPFMSKDAEKMQQLRQSRAFYSGWDGDIQQQQHHNQQQQQQQQKHHHRHQYHSSIPHTYYEQSHETTNEIVFGAVQEQDKKQESVVIKPVDYGESLYEHHNIRSRMSSMGFAHRY 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1055 509 MobiDBLite consensus disorder prediction 423 447 - -
Ssu5g1055 509 Pfam NHL repeat 145 170 IPR001258 GO:0005515
Ssu5g1055 509 PANTHER NHL REPEAT PROTEIN 1 509 - -
Ssu5g1055 509 MobiDBLite consensus disorder prediction 372 395 - -
Ssu5g1055 509 SUPERFAMILY NHL repeat 73 231 - -
Ssu5g1055 509 Gene3D - 38 229 IPR011042 -
Ssu5g1055 509 PANTHER - 1 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1055 Ssu-Chr5 33182038 33184911 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1055 - - gmx:100781836 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1055 5 33182038 33184911 Ssu5g1055 5 33182038 33184911 ECH