Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0970 ATGAGCCATTCAGGCATGGAGGAGGAAGAAGCCCCAGACGTTTTATGCGAGCTGGAAAACGTTCAAGGCTTAGTCGACGCCCTCACCGCCGTTCGGTGGAAGCGCCAGCAGGACGCCGTATTGGAGTTGTCCGAACACGGCATCGTTTTGATCGTCGAAGAAAGCGGTTGCCTCCAAGCAAAGGTTTATCTCAAACGAGAGCTATTCATTCACTACGATTACAATGCACGAGGACGACCTCGTTTTGGAGTGAGTTTGGGGCATTTCGTGGATTGCTTGAACGCCTTCTCGGTTCCTGGCCAATCAAGTGTTATTCAGATTCAATATCCAGGTCCTGACATGCAGGTTCTTCTCAAATCTGTAGATTCGCTGGATGCCAGTATTTGTGCAGAGATCAGGACAAGGATTCCAGATACAATTGCATGGGACTACAATTTTGAACCTGCAGGGACAAGCCCTTTAACCTTTACTGTTAAATCTGCAGCCACTGAAGGAAAGCTATTGAGGATCTTGAATGGCCTGGATCAAGCATCCAGATTATTCTACAGCCACATCCTCCTTCTGTTACATTGA 573 0.4782 MSHSGMEEEEAPDVLCELENVQGLVDALTAVRWKRQQDAVLELSEHGIVLIVEESGCLQAKVYLKRELFIHYDYNARGRPRFGVSLGHFVDCLNAFSVPGQSSVIQIQYPGPDMQVLLKSVDSLDASICAEIRTRIPDTIAWDYNFEPAGTSPLTFTVKSAATEGKLLRILNGLDQASRLFYSHILLLLH 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0970 190 Pfam Repair protein Rad1/Rec1/Rad17 17 104 IPR003021 GO:0000077
Ssu5g0970 190 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD1 7 162 IPR003021 GO:0000077
Ssu5g0970 190 Gene3D - 12 179 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0970 K02830 - gmx:100805068 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0970 5 29813376 29817185 Ssu5g0970 5 29813376 29817185 ECH