Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0872 ATGGAGAACAATGGGGAAAGCAATAGTAGAAGTGCTAGTTTCAGGCTGGGGTTTGGGATGGGTTCGAACGAGGCAAAAGTTCACACCGTGGTTGAGCTTGGTAGTGTTGATACGCACACTAGTCTTCTTCTAAATGGTGACGATGTTGgtgaggagagagagaaacagCAAAAACCTCTTACAAACTCTCTCTCTCCTAGGCAGATGAAGTCCCTAGTTGCTCTATGTGACACCATCTTACCTTCCATCAACAGCAACGCTATTGGCTCCTCCGACGAATCTGTTGCCAACTTCTACAGGACTTCAGCTTCCATGGCTGGAACGCCTGAGCATCTTGGGAAATTGATAAGTGAGAAACTGAAACACCCAAGTACATGGCTGTTGTTATTGACATTATGGCTACTATCTACATGGTTTGGCACATTCATACTGTGTGGCATGGCGAGCCTTTCAACAAAGTTCCCCTTCTTCCATAGCTACCCTGACCTGTCTTTGCACAAACGCCAAAAAGTAATGCAGTCTTGGTCTCTCAGTTACTTTCGTCTCCTTAGGATGTTTTTCAGAACCATCAAGCTTCTCACTCTCCTTGTCTTCTTCACTCAGCTAGATGAAGCAgaagacaacccatcatggaaGGCAATTGGCTATTGTGGACCTGATCCAGAGTTCAAAGCACAGTTGAAGAACCATTTTTTTCATAGAACATCAAAGGAAGAAAGACATGAGGAaaaagaagatgatgatgatgatactGAAGAGGTTAAAGGACCTCTTTACAAGGGCCTTGTCCATATAAATAACCCACGAGACATCATTACAGATTCTCTAAGACGATTTGGATTCTCTGTCTCTGCTACTCCTAAAAGGACCAAGGCTTCTAACCTGTCATCTCCTTCTTTAGTTATCCAATGTGATGCAGTGGTTGTTGGTTCTGGCTCTGGAGGTGGGGTAGTAGCTGGAGTTCTAGCAAATACTGGCTATAAAGTGCTGGTCTTGGAGAAAGGAAGCTATTGTGCTAGGAACAATCTTTCCCTTCTTGAAGGACCAAGCATGGATAAAATGTACCTCTCTAATAGTTTGGTTGCAACAGATGATATGTCTGTACTAATACTAGCAGGATCCACAGTTGGTGGAGGGTCTGCTATCAACTGGTCAGCCAGCATTAAAACTCCTCAACATGTATGCAAGGAGTGGTGCGATCGGCATGAGCTAGAACTATTTGAAAGTAAGTTATACAAAGAAGCCTTGGATGCTGTGTGTGAGAAAATGGGAGTTCAATCTGAGATTGAAGAGGAAGGATTCAATAATGCAGTCCTAAGAAGAGGGTGTCTAGAAATGGGGTATCCTGTGTGTAACATTCCTAGGAATGCTTCACCGGATCACTACTGTGGCTGGTGTTGCATGGGATGCAAGGATGGAAGGAAGAAAGGCACATCAGAAACATGGCTAGTGGACTTGGTGAAATCAGGTAATGGAGCAATCATTCCAAATTGTGAGGCTATACAAGTCTtacacaagaaaaagaaaggaagagacaGAAAAATAGCGCGTGGAGTGGCTTTTGCAATTGAATACAAGGGAAGCAAAGACATTTGTGTAGTGGAGTCCAAGGTCACAATTGTAGCGTGTGGAGCACTCAGTACTCCAGCATTACTCAAAAGAAGTGGCTTGAAGAATGAAAACATAGGGAGACACTTGCACCTTCATCCAGTGGCAATGGCTTGGGGCTACTTCCCTGATTCACCTTCACCTGAGCTGTGGCcagagaaacataaaaaaagctATGAAGGAGGGATTATGACAGCAATGTCCACAGTTATTGGACAGTTTGACAAATCTGGATATGGTGCAGTTATCCAAACACCTGCATTGCATCCTGGTATGTTCTCAATTCTAATGCCATGGACTTCTGGAATGGATATAAAAGATCGAATGCGCAAGTTTTCTAGAACAGCTCATGTATTTGCTCTGGCAAGGGATCAAGGATCAGGAACTGTGAATTCACCTGCCTGTATAAGTTACCAGTTGAAAGATGTGGACAAAGAGAATTTAAAGATTGGAATTGACAAGGTATTGAGAATTCTTGCAGCAGCTGGAGCTGAAGAAATTGGGACCCATAATAACAAGGGAAGGAGCTTAAATGTTAAGCAGGTGAGCTATCATCAATTTGAGAAATTTGTGAAAGAAGAAAGTTCAAGGCCTTTAACAGACCTTTCAACACCATTGTGTTCAGCACATCAGATGGGGAGCTGCAAGATGGGTACTAATCCGAAGGAATCAGTTGTGAACCAAATGGGGGAGACATGGGAAGTGGAGGGCCTTTATTTGGCAGACACAAGTGTCTTTCCCTCAGCTTTGGGTGTGAATCCAATGGTCACTGTTCAGGCTATTGCTTACTGCACTGCACAATATGTTCTTGAAGTTCTTAGAAGGAAGataaagtga 2445 0.4155 MENNGESNSRSASFRLGFGMGSNEAKVHTVVELGSVDTHTSLLLNGDDVGEEREKQQKPLTNSLSPRQMKSLVALCDTILPSINSNAIGSSDESVANFYRTSASMAGTPEHLGKLISEKLKHPSTWLLLLTLWLLSTWFGTFILCGMASLSTKFPFFHSYPDLSLHKRQKVMQSWSLSYFRLLRMFFRTIKLLTLLVFFTQLDEAEDNPSWKAIGYCGPDPEFKAQLKNHFFHRTSKEERHEEKEDDDDDTEEVKGPLYKGLVHINNPRDIITDSLRRFGFSVSATPKRTKASNLSSPSLVIQCDAVVVGSGSGGGVVAGVLANTGYKVLVLEKGSYCARNNLSLLEGPSMDKMYLSNSLVATDDMSVLILAGSTVGGGSAINWSASIKTPQHVCKEWCDRHELELFESKLYKEALDAVCEKMGVQSEIEEEGFNNAVLRRGCLEMGYPVCNIPRNASPDHYCGWCCMGCKDGRKKGTSETWLVDLVKSGNGAIIPNCEAIQVLHKKKKGRDRKIARGVAFAIEYKGSKDICVVESKVTIVACGALSTPALLKRSGLKNENIGRHLHLHPVAMAWGYFPDSPSPELWPEKHKKSYEGGIMTAMSTVIGQFDKSGYGAVIQTPALHPGMFSILMPWTSGMDIKDRMRKFSRTAHVFALARDQGSGTVNSPACISYQLKDVDKENLKIGIDKVLRILAAAGAEEIGTHNNKGRSLNVKQVSYHQFEKFVKEESSRPLTDLSTPLCSAHQMGSCKMGTNPKESVVNQMGETWEVEGLYLADTSVFPSALGVNPMVTVQAIAYCTAQYVLEVLRRKIK 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0872 814 PANTHER LONG-CHAIN-ALCOHOL OXIDASE FAO1-LIKE PROTEIN 43 812 - -
Ssu5g0872 814 PIRSF Lg_Ch_AO 51 814 IPR012400 GO:0046577
Ssu5g0872 814 Gene3D - 728 813 IPR036188 -
Ssu5g0872 814 SUPERFAMILY FAD/NAD(P)-binding domain 302 807 IPR036188 -
Ssu5g0872 814 Gene3D - 289 604 IPR036188 -
Ssu5g0872 814 Pfam GMC oxidoreductase 305 571 IPR000172 GO:0016614|GO:0050660
Ssu5g0872 814 PANTHER LONG-CHAIN-ALCOHOL OXIDASE 43 812 - -
Ssu5g0872 814 MobiDBLite consensus disorder prediction 44 63 - -
Ssu5g0872 814 Pfam GMC oxidoreductase 672 800 IPR007867 GO:0016614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0872 Ssu-Chr5 23656394 23665951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0872 37 809 Acyl Lipid Metabolism Gene Families AT4G19380 57.935 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0872 K17756 - gmx:100778208 1427.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0872 5 23656394 23665951 Ssu5g0872 5 23656394 23665951 ECH