Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0871 ATGGAAAAACCTCCCAGATGCAAATTCACAGtgatcttcttcatcatcatttcCCTCTCCCTTGGCTTAATTTCCTTTATCTTGTGTATAGCCGCCGAGATAAAGAGGAACAAGGAGGAGGATCTCAGGTGGAGTGGGAAACTATGTTATTTGCCATCAAGCAAGGCATTTGGATTGGGAATTGCAGCTTTGGTTAGTTTTTTTCTTGCCCAACTCATTGggaattctatattattaaagtattcTTGTTCGAGAAGAAAAAGTATATCCCAGTACAAGATGCCTGCTACTGCAAAGGTTCTGGTTTTGATATCTTGGGTTAGCTTTGGATTTGCAGCTATTTTATTGATTACAGCCACAAGCATGAACAGAAGGCAGCCGTAtagggtagggtggttgaatGGTGAGTGCTACCTAGTCAAAGGGGGAACTTACGCTGGCTCAGCCATATTGGTCCTAGTCACAGTGTGCTCTGTAAATGGTTCAGCTTTCTCAACAATAAAATCTAGCCAAGCAAATCAGCATacaaaaatacacaaacaaATGGGGTGA 552 0.3678 MEKPPRCKFTVIFFIIISLSLGLISFILCIAAEIKRNKEEDLRWSGKLCYLPSSKAFGLGIAALVSFFLAQLIGNSILLKYSCSRRKSISQYKMPATAKVLVLISWVSFGFAAILLITATSMNRRQPYRVGWLNGECYLVKGGTYAGSAILVLVTVCSVNGSAFSTIKSSQANQHTKIHKQMG 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0871 183 PANTHER PROTEIN MODIFYING WALL LIGNIN-1 1 171 - -
Ssu5g0871 183 PANTHER OS07G0462200 PROTEIN-RELATED 1 171 - -
Ssu5g0871 183 Pfam Protein of unknown function (DUF1218) 63 156 IPR009606 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0871 Ssu-Chr5 23642050 23643199 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0871 - - gmx:100500694 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0871 5 23642050 23643199 Ssu5g0871 5 23642050 23643199 ECH