Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0868 ATGTTTCCAATATCAAACACCTGTAAAACTCATCTTACATCAATACAGTTTACCACATTACTAAGAACATTTTCGGGtttttttggaattaaaatatCACTTTGTTTGATTTCGGTTTCACCAGCAACCAGCCGAGTCAGGGGGCCACTGCTTTTGgtctcttcctctttctccGCCCGACACGACGCCGTTTATActctctccttcttcttcgcGCACACTCCACGCATCAATTCTCCCAATTCCCAAACCCAAAAACTCCTCTTCGCTACTAGTCTCGCGCTGCAGTGCAGATCCACGTACAAAACCTCGTTCCGGATCCCGATCCCACCAATCACCGAAAGCAACAGAACAAAAATGGAGCAATTAAAGACGATCGGGCGCGAACTCGCGATGGGATCCCAAGGCGGGTTCGGGCAATCGAAGGAGTTCCTGGAGCTCGTGAAATCCATCGGCGAGGCCCGATCGAAGGCCGAGGAGGACCGCATCGTGCTCCGCGAGATAGAGACCCTGAAACGACGCATCGTGGAGCCCGACACCCCGAAGCGTAAGATGAAGGAGTACATCATCCGCCTCCTCTACGTCGAGATGCTCGGCCACGACGCGTCGTTCGGCTACATCCACGCCGTCAAGATGACCCACGACGACAACCTCCTCTCCAAACGCACCGGCTACTTGGCCGTCACGCTCTTCCTCAACGACGACCACGACCTCATCATCCTCATCGTCAACACCATCCAGAAGGACCTCAAGTCCGACAACTACCTCGTCGTCGGCGCCGCGCTCAACGCCGTTTGCAAGCTCATCAACGAGGAAACCATCCCCGCCGTTCTCCCTTCGGTGATCGACCTCCTCGCCCACCCCAAAGACTCCGTTAGGAAGAAGGCCGTTATGGCTCTTCACCGTTTCCACCACAAGTCCCCTTCCTCCGTTTCGCATTTAATCTCCAATTTCCGTAAAAAGTTGTGTGATAACGACCCCGGCGTCATGGGTGCTACTCTGTGCCCTCTCTTTGACCTCATTGCTGCTGATCCTAACTCTTATAAGGACCTTGTCGTTAGCTTCGTCAGCATTCTTAAACAAGTCGCAGAACACAGGTTGCCTAAGAGCTATGACTATCACCAAATGCCAGCGCCGTTCATTCAGATTAAGTTGCTGAAAATACTTGCGGTGTTGGGGAGTGGCGACAAGCAAGCTAGTGAGCACACGTATACTGTTATTGGTGAAATAATTAGGAAGGGCGATTCGTCGAGTAATATAGGGAATGCTATACTTTATGAGTGCATATGCTGTGTCTCTTCCATATATCCCAATGCTAAGTTGTTAGAAGCGGCTGCGGATGTCAATGCAAAGTTTTTGAagAGTGACAGTCATAATCTCAAGTACATGGGCATTGATGCGCTTGGTCGGCTGATAAAGATAAGTCCACATGTTGCAGAACAGCATCAATTGGCCGTTATTGACTGCTTAGAGGACCCTGATGATACTCTGAAGCGAAAAACTTTTGAACTACTCTACAAAATGACCAAGTCTTCCAATGTGGAAGTGATCGTTGACAGAATGATTGATTACATGATTAGCATAAGTGATGATCATTATAAAACCTATATAGCATCTCGATGTGTCGAACTTGCAGAGCAATTTGCTCCTAGTAATCATTGGTTTATACAGACCATGAATAAAGTTTTTGAGCATGCTGGAGATCTTGTGAATATTAAGGTGGCACATAATTTAATGCGATTGATTGGTGAAGGATTTGGAGAGGATGATGCTGCTGAAGATAGTCAGTTGAGATCATCTGCTGTGGAGTCATATTTGCACATTATTGGGGAGCCAAAGCTTCCGTCAGTGTTTCTTCAAGTAATCTGTTGGGTTCTGGGGGAGTATGGCACAGCTGATGGAAAGTATTCTGCTTCCTATATCACTGGGAAGTTATGTGACGTTGCAGAGGCATATTCAAATGATGAAACTGTAAAGGCGTATGCGATTTCAGCATTAACAAAAGTTTATGCATTTGAAATAGCAGCTGGGAGGAAAGTTGATATGCTACCTGAGTGTCAATCTCTTGTTGAAGAACTATTAGCATCCCACTCCACTGATTTACAGCAACGTGCATATGAATTGCAAGCTCTTATTGGTTTGGATGCACGTGCTGTTGAAACAATAACGCCCCAAGATGCAAGTTGCGAAGACATTGAgGTTGATAAGAATCTTTCTTTCCTCAATGGTTATGTCCACAAGTCTCTAGAAAGGGGTGCTCAGCCCTACATTCCAGAGGATGAGCGCACTGGAATGGTGAATGTGAGCAACTTCAGAAGTCAGGATCAACATGAATCTGCACATGGTCTGAGATTTGAGGCATATGaagttccaaagcctccaatgCCATCAAAAGTTGCTCCAGTTTTACTTTCATCCTCAACTGACCTTGTTCCAGTACCTGAGGCATTGTATTCGAGGGAGACTCACCAGATCTTGTCAGTGGGATTAGCATCAGAGACAGGATCCTCAGAGCTTAAGCTGAAGCTTGATGGTGTTCAGAAAAAATGGGGTAGGCCAACTTATTCATCCCCAACATCATCTTCCTCAGATTCTACTTCCCAAAACCCAGTGAATGGGGTGACTCAGATGGATATTGCAACTGCTATAAATTCAAAAGCACGTGATAATTATGATACAAGAAATCAACGGATTGAAATTTCTCCCGAAAAGCAAAAACTTGCAGCTTCATTGTTTGGTGGTTCAACTAAAACCGAGAAAAGATCATCAACTAGCAACAAGGTTCCAAAGGCTAGTGCTAGTGCTGTTGACAGAACTCAGGAATCAAAAGCTGCAGTTGCACCCGGTGAAGTTGCTCAGGAGAAAGCTAATCCACCATCTCCTCCTCCAGATTTGCTTGACTTGGATGACTCAACTCTCACTGTTGCACCTCCCTCTGTGGACCCATTCAAGCAATTGGAAGGACTTCTTGACCCAAGCATTAGTTCTACAACAAATCATAGTAGTGGTGCTGTTACGAATGCACCAGATATTATGGCACTCTATGCAGAGACTCCTGTAAGTAGAGAGGGTGGCACTGGTGGCTATTCTATCCCTGTGAGTGGGGATAATGTAAATCTTTTATCAGAGTTGTCAAATCCAGCTGTCAGAGGTGCTACTGGAGAAACAACTGTGACGCCTTTGTCACAATCTGTAAAGGGTCCAAATGCTAAAGATTCATTGCAAAGGGATGCAAAAGTCAGGCAGATGGGTGTGACACCCACAAGTCAGAACCCCAACTTGTTTAGGGATTTGCTTGGCTAA 3303 0.4502 MFPISNTCKTHLTSIQFTTLLRTFSGFFGIKISLCLISVSPATSRVRGPLLLVSSSFSARHDAVYTLSFFFAHTPRINSPNSQTQKLLFATSLALQCRSTYKTSFRIPIPPITESNRTKMEQLKTIGRELAMGSQGGFGQSKEFLELVKSIGEARSKAEEDRIVLREIETLKRRIVEPDTPKRKMKEYIIRLLYVEMLGHDASFGYIHAVKMTHDDNLLSKRTGYLAVTLFLNDDHDLIILIVNTIQKDLKSDNYLVVGAALNAVCKLINEETIPAVLPSVIDLLAHPKDSVRKKAVMALHRFHHKSPSSVSHLISNFRKKLCDNDPGVMGATLCPLFDLIAADPNSYKDLVVSFVSILKQVAEHRLPKSYDYHQMPAPFIQIKLLKILAVLGSGDKQASEHTYTVIGEIIRKGDSSSNIGNAILYECICCVSSIYPNAKLLEAAADVNAKFLKSDSHNLKYMGIDALGRLIKISPHVAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIDYMISISDDHYKTYIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIGEGFGEDDAAEDSQLRSSAVESYLHIIGEPKLPSVFLQVICWVLGEYGTADGKYSASYITGKLCDVAEAYSNDETVKAYAISALTKVYAFEIAAGRKVDMLPECQSLVEELLASHSTDLQQRAYELQALIGLDARAVETITPQDASCEDIEVDKNLSFLNGYVHKSLERGAQPYIPEDERTGMVNVSNFRSQDQHESAHGLRFEAYEVPKPPMPSKVAPVLLSSSTDLVPVPEALYSRETHQILSVGLASETGSSELKLKLDGVQKKWGRPTYSSPTSSSSDSTSQNPVNGVTQMDIATAINSKARDNYDTRNQRIEISPEKQKLAASLFGGSTKTEKRSSTSNKVPKASASAVDRTQESKAAVAPGEVAQEKANPPSPPPDLLDLDDSTLTVAPPSVDPFKQLEGLLDPSISSTTNHSSGAVTNAPDIMALYAETPVSREGGTGGYSIPVSGDNVNLLSELSNPAVRGATGETTVTPLSQSVKGPNAKDSLQRDAKVRQMGVTPTSQNPNLFRDLLG 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0868 1100 SUPERFAMILY ARM repeat 158 738 IPR016024 -
Ssu5g0868 1100 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 132 1096 - -
Ssu5g0868 1100 MobiDBLite consensus disorder prediction 911 939 - -
Ssu5g0868 1100 PIRSF AP4_epsilon 763 956 IPR017109 GO:0015031|GO:0030124
Ssu5g0868 1100 PIRSF AP4_epsilon 1052 1100 IPR017109 GO:0015031|GO:0030124
Ssu5g0868 1100 PIRSF AP4_epsilon 130 793 IPR017109 GO:0015031|GO:0030124
Ssu5g0868 1100 MobiDBLite consensus disorder prediction 1053 1070 - -
Ssu5g0868 1100 PANTHER AP-4 COMPLEX SUBUNIT EPSILON-1 132 1096 - -
Ssu5g0868 1100 MobiDBLite consensus disorder prediction 911 972 - -
Ssu5g0868 1100 MobiDBLite consensus disorder prediction 849 872 - -
Ssu5g0868 1100 MobiDBLite consensus disorder prediction 1053 1100 - -
Ssu5g0868 1100 MobiDBLite consensus disorder prediction 1082 1100 - -
Ssu5g0868 1100 Gene3D - 131 725 IPR011989 -
Ssu5g0868 1100 MobiDBLite consensus disorder prediction 852 872 - -
Ssu5g0868 1100 Pfam Adaptin N terminal region 177 713 IPR002553 GO:0006886|GO:0016192|GO:0030117
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0868 Ssu-Chr5 23473612 23488783 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0868 K12400 - gmx:100806914 1706.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0868 5 23473612 23488783 Ssu5g0868 5 23473612 23488783 ECH