Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0847 ATGGCTTATGCTTCACTTTCTATGGCGATTGGAGCAGTTTTTATATGGTCATATGTTTACAACATAATGACGATTTCCTCAAGTAGAATCCAAAAAGAAGACAATACAAGCGATGACAACAGCTTATTGAAGGCTTCAGGGGAAATATCAGAGTCAAACCCAGACAATTTCTCAGAAACACTTAATCCTACAGAAGACACCATGGATGATGCATATACCTTACTGCTTCCTGAGGCAGAATCGAAGGAAAAAGTTTCAATCTCAAGTAAAATTAAGCACCACTTGAGGATGATTTCAAGCAACTTAAATTTCAAAGCCATGTTTGCGCCATCAACCCTTGGAGCTatTGCTGGATTTATCATTGGTGTAATCCCCCAAATACGTAATCTCATTTTAGGCAGTAGTGCTCCGCTTCATGTGGTCGAAGAATCTGCTTCCACGTTGGGTGATGCAGCCGTCCCTACCCTCACTCTTATAATGGGTGCAAACCTACCTAAAGGtgaacttttatattGTTTGAAAGGAACAAAGACTCCAGTGTGGACCATTGCGGGAATTATAGCTGTCAGATATATTTTCCTACCTCTCCTGGGTGTTGCAGTTGTTAAAGGGGCGATACACTTGAGTTTGGTGCATTCAGATCCCTTGTATCAGTTCGTGCATTTACTTCAATTTGCACTTCCAGCCATGAATATAGTTGTGTAA 705 0.4043 MAYASLSMAIGAVFIWSYVYNIMTISSSRIQKEDNTSDDNSLLKASGEISESNPDNFSETLNPTEDTMDDAYTLLLPEAESKEKVSISSKIKHHLRMISSNLNFKAMFAPSTLGAIAGFIIGVIPQIRNLILGSSAPLHVVEESASTLGDAAVPTLTLIMGANLPKGELLYCLKGTKTPVWTIAGIIAVRYIFLPLLGVAVVKGAIHLSLVHSDPLYQFVHLLQFALPAMNIVV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0847 234 MobiDBLite consensus disorder prediction 40 63 - -
Ssu5g0847 234 Pfam Membrane transport protein 1 206 IPR004776 GO:0016021|GO:0055085
Ssu5g0847 234 MobiDBLite consensus disorder prediction 33 63 - -
Ssu5g0847 234 PANTHER - 1 232 IPR045033 GO:0080162
Ssu5g0847 234 PANTHER AUXIN EFFLUX CARRIER FAMILY PROTEIN 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0847 Ssu-Chr5 22254245 22257954 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0847 K24139 - gmx:100817605 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0847 5 22254245 22257954 Ssu5g0847 5 22254245 22257954 ECH