Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0801 ATGTTGAGTGGGGGATTGTTTTTTTGGGAATGGAAATTTGAAGGGCAATGTTGGGAAGCGGGGGGGTTTTGGATGGGGGTACGAGGTTGGCTCAAAGAGACAAAGAATGATGGAATCCAATCCATACTTCGCGGTGAACAGCAGGACAGGCAGCTTACCTTATGGATATACCGGTGGCTTCCAGCCCCCTCCGTTTCCCGTGGTTCGTCTCGGGGGCTTTCGTTCAACTGCACCGACATTGACATCTTGAAGTTCTTTGCTGGACTGACCATTGTGGATGTGTTGCTGGTCAACAAGAGTGGACGGTTCTTGGGCGAGGCCTTCGTGGTATTTGCAGGAGCAATGCAGGTTGAGTTTGTGTTACAGAGAGATCGCCAGAACATGGGTCGCAGATATGTGGAAGTGTTCAGGAGTAAGAAGCAGGATTATTATAATGCTGTTGCTGCTGAGATCAATTATGAAGGAATATATGATAACAATTACCATTGTAGTAGCCCTCCACCATCCCGGTCGAAGAGGTTCAGTGATAAAGACCAGATGGAGTGCACTGAGATATTGAAGATGCCTGGACTTCCCTTCCAAGTGACAAAATCTCGAATTGTTGAATTCTTTAAAGTTTTCGAGCTGGTAGAAGATAGGGTACACATTGCGTGTTGCCCTGATGGGAAGGCTACAGGAGAGAGTGGAGTTATAAAATGA 699 0.4692 MLSGGLFFWEWKFEGQCWEAGGFWMGVRGWLKETKNDGIQSILRGEQQDRQLTLWIYRWLPAPSVSRGSSRGLSFNCTDIDILKFFAGLTIVDVLLVNKSGRFLGEAFVVFAGAMQVEFVLQRDRQNMGRRYVEVFRSKKQDYYNAVAAEINYEGIYDNNYHCSSPPPSRSKRFSDKDQMECTEILKMPGLPFQVTKSRIVEFFKVFELVEDRVHIACCPDGKATGESGVIK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0801 232 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 71 228 - -
Ssu5g0801 232 Gene3D - 70 149 IPR012677 -
Ssu5g0801 232 CDD RRM_hnRNPH_ESRPs_RBM12_like 71 136 - -
Ssu5g0801 232 SUPERFAMILY RNA-binding domain, RBD 71 145 IPR035979 GO:0003676
Ssu5g0801 232 Gene3D - 183 231 IPR012677 -
Ssu5g0801 232 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 71 228 - -
Ssu5g0801 232 SUPERFAMILY RNA-binding domain, RBD 185 227 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0801 Ssu-Chr5 20601941 20602639 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0801 K12898 - gmx:100819738 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0801 5 20601941 20602639 Ssu5g0801 5 20601941 20602639 ECH