Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0707 ATGGCGCAACTAGGAGTCCCAGTCAAGTTACGCTCATGCAAACTCTCTCATATTCACACTCATACTCACAAtccctctttcttctctcactctctcccTCCCCTTTTCACCTTCACCTCCAAACCTTCTCTCCGTGCCCAACCTCATCACCCCTTATCCACGCTTCGTTCCCGCACTCCCACACCACGCGGCAGCAACAAATCAGATATAATGTCGCAGCTGGAGCTTGGGAAACCAGAGCCAAAGGGGAAACCCGAGAAACGAGTCAACGGTATATTCTGGGTCATTCTCCTCAACATTGGCATATTCGTCGCTGACCACTTTTTTCAGGTTAATGGGATCAAGGCTTTGTACTTGTACCACAATTGGCCTGCTTGGTACCAGTTTGTCACAGCTACATTTTGTCATGCTAATTGGAAGCATCTTTCTAGCAACCTTTTCTTCTTGTACATTTTTGGAAAGCTTGTTGAAGAAGAGGAAGGGAACTTTGCTTTGTGGCTTTCTTACATTCTTACTGGTGTAGGAGCAAACCTTGTTTCGTGGTTGGTTTTACCAAGAAATACGGTTTCTGTTGGAGCTTCTGGTGCTGTTTTTGGGTTATTTACTATCAGTGTCCTTGTAAAGATGTCCTGGGATTGGAGGAAGATCCTTGAAGTGCTTATACTGGGTCAGTTTGTTATAGAGAAGGTCATGGAAGCAGCCCAAGCTTCAACATCATTATCAGGAACCTTCCGCGGAGGCTACTCATTGCAAAGTGTAAATCATATTGCACATCTTTCTGGTGCTCTTGTTGGTGTGCTTTTGGTTTGGCTCCTTAGCAAAGTTCCTTCTGATCCTTAA 840 0.4345 MAQLGVPVKLRSCKLSHIHTHTHNPSFFSHSLPPLFTFTSKPSLRAQPHHPLSTLRSRTPTPRGSNKSDIMSQLELGKPEPKGKPEKRVNGIFWVILLNIGIFVADHFFQVNGIKALYLYHNWPAWYQFVTATFCHANWKHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANLVSWLVLPRNTVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTSLSGTFRGGYSLQSVNHIAHLSGALVGVLLVWLLSKVPSDP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0707 279 PANTHER RHOMBOID-LIKE PROTEIN 11, CHLOROPLASTIC-RELATED 51 277 - -
Ssu5g0707 279 MobiDBLite consensus disorder prediction 45 84 - -
Ssu5g0707 279 PANTHER RHOMBOID-RELATED PROTEIN 51 277 - -
Ssu5g0707 279 Pfam Rhomboid family 126 274 IPR022764 GO:0004252|GO:0016021
Ssu5g0707 279 Gene3D - 86 277 IPR035952 -
Ssu5g0707 279 SUPERFAMILY Rhomboid-like 91 275 IPR035952 -
Ssu5g0707 279 MobiDBLite consensus disorder prediction 45 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0707 Ssu-Chr5 17330066 17332846 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0707 - - gmx:100781449 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0707 5 17330066 17332846 Ssu5g0707 5 17330066 17332846 ECH