Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0706 atgaagcctgactcaatattttttaacgCTCTTGTAAATGCATTTGCTGAAGCTGGGAACATGGATGATGCCAAGAAAGTTGttcagaaaatgaaagaaagtggAGTAAAGCCTAGTGCTTGCACTTATAACACATTGATAAAAGGGTACGGGATTGCAGGTAAGCCTGATGAGTCAATGAAGTTGCTAGATCTGATGTCAACAGAAGGAAATGTAAAACCCAATCTCAAGACATACAATATGCTTATCAGAGCATGGTGTAAACTGGATAACATATCTGAGGCATGGAATGTGGTGTATAAGATGTCTTCTTCTGGAATGCAACCAGATGCTGTTACCTTCAACACTATAGCAACAGCTTATGCTCAGAATGGAAAGACTGCTCAGGCTGAAGCAATGATTTTAGAGATGCAGAGGAATGGTTTGGAACCCAATGAGAGAACTTGCACCATCATCATGAGTGGATATTGTAGAGAAGGTAAGGTAAAGGAAGCTCTAAGGTTTGTATACAGGATGAAGGATCTGGGGCTGCAGCCGAATCTTATTGCACTTAATTCCCTGGTTAATGGTTTTGTGGACATGATGGATCGAGATGGTGTCGATGAGGTGTTAAAGTTGATGGAAGAATTTAGGATCCAACCAGATGTGATAACATATAGTACTATAATGAATGCATGGAGCCAAGCTGGATTCTTGGAAAAATGCAAGGAAATCTACAATAACATGTTAAAATCTGGTGTAAAGCCAGATGCGCATGCTTATAGTATTCTTGCTAAAGGTTATGTGCGAGCACAAGAAATGGAAAAAGCTGAAGAACTGGTAACTGCCATGACTAAATCAGGTGTCCACCCAAATGTTGTTATATGTACAACTGTCATAAGTGGATGGTGCAGTGTTGGCAGAATGGACAATGCCATCAGGGTTTTTGACAAGATGGGTGAATTTGGGATTTCTCCAAATTCGAAGACTTTTGAGACACTAATATGGGGATATGTAGAAGCAAAACAGCCGTGGAAAGCAGAAGGAATACTCCAAATAATGGAAGAGTTTCATGTTCAACCCAAGAAATCGACCATTTTGCTTGTTGCAGAAGCTTGGTGTTTTGCTGGCTTAAAAGAAGAGGCAAAGACACTACTGAGTACTGTAAAACCTGAGCAGATGACCAATTCAATAGAGGAAGAGGACAATACACCTGCTAAAAGTGCAGAGAAAATTTACCAAAAGCCACATACTAATGCTCCTTTCTGTAGTCTCTTACATATTCCGTCTATATCTTCCACTGACCAGAAAGGTTCAGCTTTGACAGCTAGAAGACATAGAAGGCTCCTAAGAGATGGTGATTTGGAGACTCCATCGCTCACAACAAAATTCAAGTGTCATTCTCAAATTTGTAGATCTGGTGAAGGATTTTCTATTATGTGCAAACAGTTTCAAGGACAACATGGCACATACCAACTTGCAAATTCATGTACAGCAGTATTCTTAAACTAA 1491 0.387 MKPDSIFFNALVNAFAEAGNMDDAKKVVQKMKESGVKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNMLIRAWCKLDNISEAWNVVYKMSSSGMQPDAVTFNTIATAYAQNGKTAQAEAMILEMQRNGLEPNERTCTIIMSGYCREGKVKEALRFVYRMKDLGLQPNLIALNSLVNGFVDMMDRDGVDEVLKLMEEFRIQPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEELVTAMTKSGVHPNVVICTTVISGWCSVGRMDNAIRVFDKMGEFGISPNSKTFETLIWGYVEAKQPWKAEGILQIMEEFHVQPKKSTILLVAEAWCFAGLKEEAKTLLSTVKPEQMTNSIEEEDNTPAKSAEKIYQKPHTNAPFCSLLHIPSISSTDQKGSALTARRHRRLLRDGDLETPSLTTKFKCHSQICRSGEGFSIMCKQFQGQHGTYQLANSCTAVFLN 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0706 496 Gene3D Tetratricopeptide repeat domain 198 413 IPR011990 GO:0005515
Ssu5g0706 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 39 73 IPR002885 -
Ssu5g0706 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Ssu5g0706 496 SUPERFAMILY HCP-like 13 280 - -
Ssu5g0706 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Ssu5g0706 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Ssu5g0706 496 PANTHER OS01G0228400 PROTEIN 1 496 - -
Ssu5g0706 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 4 38 IPR002885 -
Ssu5g0706 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Ssu5g0706 496 Pfam Pentatricopeptide repeat domain 2 51 IPR002885 -
Ssu5g0706 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Ssu5g0706 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Ssu5g0706 496 Gene3D Tetratricopeptide repeat domain 1 90 IPR011990 GO:0005515
Ssu5g0706 496 Gene3D Tetratricopeptide repeat domain 91 197 IPR011990 GO:0005515
Ssu5g0706 496 Pfam PPR repeat 71 102 IPR002885 -
Ssu5g0706 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Ssu5g0706 496 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 496 - -
Ssu5g0706 496 TIGRFAM PPR: pentatricopeptide repeat domain 148 180 IPR002885 -
Ssu5g0706 496 TIGRFAM PPR: pentatricopeptide repeat domain 78 111 IPR002885 -
Ssu5g0706 496 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Ssu5g0706 496 TIGRFAM PPR: pentatricopeptide repeat domain 41 75 IPR002885 -
Ssu5g0706 496 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Ssu5g0706 496 TIGRFAM PPR: pentatricopeptide repeat domain 8 39 IPR002885 -
Ssu5g0706 496 TIGRFAM PPR: pentatricopeptide repeat domain 112 146 IPR002885 -
Ssu5g0706 496 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Ssu5g0706 496 Pfam PPR repeat family 284 331 IPR002885 -
Ssu5g0706 496 Pfam PPR repeat family 109 158 IPR002885 -
Ssu5g0706 496 Pfam PPR repeat family 214 262 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0706 3 391 Glycosyltransferase AT1G05670 28.278 3.02e-54 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0706 K17710 - gmx:100779093 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0706 5 17326173 17328283 Ssu5g0706 5 17326173 17328283 ECH