Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0703 ATGGCGTTAGCAGTTAGGGCTTTATGGACAGTGAGAAAGAGTTGCAGAGGAAGGCCACACTTCTTCCCAAATCCTCACCGTTCCGGTTTCTGCAAACGTGCACAAtcacattcaaattcaaattcaaattcacttCTCCTCAAATTGCTTCAGGTTCCCAATTCACGCATCAAAACGACGCTGGATCAGGAAATGGCTTCCCTTCAAAGATCACAACCTTCGTGGGACTTCCTTGTTACCTCTCTATCCCCGTCTTCTTCCGACAAAGCTCGATTGGTTTTGGAATGGATTTTGGAGAAGATgctgaaagaaaatgagaaagaccGTGATCTCTTTTCTGAACTCATCTTTCTATGTGGAAAGGTGAAGGACGTGATGCTAGGAATGCGTGTGTTTGGTTCTATGGAGGCTACTGGAGTTAAACCCACTTCCCTGGTTTTCAATTCCCTTATAAGTGTTTGTTTGTCTTCCCATGATGTTGTTACAGCAGTTAGTTTATTTGAGATCATGGAGAGTTCAGAGAGCTATAAACCGGATTTTCACActtacaatatctttatttcGGCATTTTCCAAGTCAGGGAATGTTGATGCCATGTTAGCTTGGTACTCGGCGAAGAAGGCTGCTGGACTTGGTCCTGATCTTCAAATGTTTGAATCCCTTATATCGGGCTGTGTTAATTCTAGAAAGTTTGAGATTGCTGACACGATTTTTGAAGAAATGATGATTTCTGGAATTGTACCTAGTGCATCCATACTGGAAAGTATGCTTAGTGGGATTTGCAAGCAAAAGAGTTTGCGTCGAGCGGAggaatttttcaagtttgtgaTAGATTCTGGATGGGAAATAAATGAGAACATGGCTGATAAGTTAGTAGCATTGTATCATCAACAAGGTAAAGTGGAAGAGATGGAGGAGCTACTTGAAACTATGATGAAGCCCTGTGTAGTTACTACCGGTGTTCTCACTCGAATTCATTGTGGGATTGTGAGGATGTATGCCATGTTAGATAGATTGGATGATGTAGAGTTTGCTGTGGGTAGAATGCTTAAACAAGGGCTGTCATTCACAAGTGCAAATGATGTTGAAAAGGTCATCTGCTTATACTTCAGAAGGGAAGCTTATGATAGGCTAGACATATTCTTGGAGTGTTTAAAGACATGCTGTGTGCTTAATAAATCAACTTATGATTTGTTGATATCTGGCTATAGAAGAGCACAATTGCTTGAAAAAGTAGATAGAGTGATGAAAGACATGAAATCATCTGGATTAGCATGA 1278 0.3858 MALAVRALWTVRKSCRGRPHFFPNPHRSGFCKRAQSHSNSNSNSLLLKLLQVPNSRIKTTLDQEMASLQRSQPSWDFLVTSLSPSSSDKARLVLEWILEKMLKENEKDRDLFSELIFLCGKVKDVMLGMRVFGSMEATGVKPTSLVFNSLISVCLSSHDVVTAVSLFEIMESSESYKPDFHTYNIFISAFSKSGNVDAMLAWYSAKKAAGLGPDLQMFESLISGCVNSRKFEIADTIFEEMMISGIVPSASILESMLSGICKQKSLRRAEEFFKFVIDSGWEINENMADKLVALYHQQGKVEEMEELLETMMKPCVVTTGVLTRIHCGIVRMYAMLDRLDDVEFAVGRMLKQGLSFTSANDVEKVICLYFRREAYDRLDIFLECLKTCCVLNKSTYDLLISGYRRAQLLEKVDRVMKDMKSSGLA 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0703 425 Pfam PPR repeat 394 424 IPR002885 -
Ssu5g0703 425 Gene3D Tetratricopeptide repeat domain 85 373 IPR011990 GO:0005515
Ssu5g0703 425 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 424 - -
Ssu5g0703 425 TIGRFAM PPR: pentatricopeptide repeat domain 181 204 IPR002885 -
Ssu5g0703 425 TIGRFAM PPR: pentatricopeptide repeat domain 218 249 IPR002885 -
Ssu5g0703 425 TIGRFAM PPR: pentatricopeptide repeat domain 395 424 IPR002885 -
Ssu5g0703 425 Pfam PPR repeat family 142 192 IPR002885 -
Ssu5g0703 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Ssu5g0703 425 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 424 - -
Ssu5g0703 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 425 IPR002885 -
Ssu5g0703 425 Pfam Pentatricopeptide repeat domain 208 250 IPR002885 -
Ssu5g0703 425 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0703 108 425 Glycosyltransferase AT1G05670 22.129 7.33e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0703 - - ccaj:109813006 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0703 5 17279738 17282023 Ssu5g0703 5 17279738 17282023 ECH