Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0702 ATGGACTATTGCTTGAGAGAGCTAGAAGGAAAGCAAGCACATGACCCTTTATTCATAGAGAGAATGAACAATTCATCAGCAACTAGTGAGAGATGTGTGTGTATTCCAGGGCCAGTGATTGTGGGAGCAGGGCCTTCAGGGCTTGCAACAGCAGCATATCTGAAAGAGAAAGGTGTGCCAAGTCTAATCCTAGAGAGATCCAACTGCATAGCATCTTTGTGGCAACTCAAGACCTATGATCGGCTTCACCTTCACTTGCCAAAGCAGTTTTGTGAACTTCCCTTGATGGGGTTCCCTTGCGACTTCCCCACATACCCAACGAAACAACAGTTCATAGAGTACTTGGAGAGCTACGCGGAGAGGTTTGACATTAGGCCACGGTTCAATGAGACCGTGAAGCACGCGGAGTTTGATGCCACGCTTGGGTTCTGGAGGGTGAagagtttgaataaaaaagaggTGGCAACAGAGTTTGTGTGTAGGTGGCTGATTGTGGCCACTGGGGAGAATGCAGAGGCAGTGGTGCCTGAGATTGAGGGAATGGGGAAGTTCGGTGGGACCATAAAGCACACAAGTTTGTATAAGAGTGGGGAAGAGTTTAGAGGGAAGAGAGTGTTGGTGGTTGGGTGTGGGAATTCAGGGATGGAAGTGTGCTTGGATCTTTGCAACCATAATGCTACTCCTTCTCTTGTGGTCAGAGATACAGTACATATCTTACCACAAGAGATGCTAGGAAAATCAACTTTTGGGTTGTCCATGTGGTTGCTAAAGTGGCTGCCCATTCGGCTTGTGGATCGCTTCCTTCTCATAGTGTCATGGCTCATGCTTGGCGACACAGCTCGATTTGGATTGGACCGGCCAAGGTTGGGTCCCCTTCAACTCAAAAACCTATCCGGAAAGACACCAGTGCTAGATGTGGGTACCCTTGCCAAGATTAAAAGTGGACATATAAAGGTACGGCCAGGCATCAAGCGGTTAAAACGTTATACAGTTGAATTTGTTGATGGAAGGACAGAGAATTTTGATGCTATCATATTGGCAACTGGTTACAAAAGTAATGTGCCTCATTGGCTAAAGGAAGGGGATATGTTCTCTAAGGAAGATGGGTTCCCTACGAAGCCATTCCCAAATGGATGGAAAGGTGAGAATGGTCTCTATGCAGTTGGTTTCACCAAACGTGGACTACTTGGGACATCCATGGATGCCAAGAGAATAGCTGAAGATATTGAATGGTGTTGGAAAGCTGACGCAAAGCATAGTACCGCTTTTTCTCTCTCACTTAATGTGCCACAATCCAATTCATGA 1305 0.4605 MDYCLRELEGKQAHDPLFIERMNNSSATSERCVCIPGPVIVGAGPSGLATAAYLKEKGVPSLILERSNCIASLWQLKTYDRLHLHLPKQFCELPLMGFPCDFPTYPTKQQFIEYLESYAERFDIRPRFNETVKHAEFDATLGFWRVKSLNKKEVATEFVCRWLIVATGENAEAVVPEIEGMGKFGGTIKHTSLYKSGEEFRGKRVLVVGCGNSGMEVCLDLCNHNATPSLVVRDTVHILPQEMLGKSTFGLSMWLLKWLPIRLVDRFLLIVSWLMLGDTARFGLDRPRLGPLQLKNLSGKTPVLDVGTLAKIKSGHIKVRPGIKRLKRYTVEFVDGRTENFDAIILATGYKSNVPHWLKEGDMFSKEDGFPTKPFPNGWKGENGLYAVGFTKRGLLGTSMDAKRIAEDIEWCWKADAKHSTAFSLSLNVPQSNS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0702 434 Gene3D - 38 417 IPR036188 -
Ssu5g0702 434 SUPERFAMILY FAD/NAD(P)-binding domain 201 395 IPR036188 -
Ssu5g0702 434 PRINTS FAD-dependent pyridine nucleotide reductase signature 342 364 - -
Ssu5g0702 434 PRINTS FAD-dependent pyridine nucleotide reductase signature 204 222 - -
Ssu5g0702 434 PRINTS FAD-dependent pyridine nucleotide reductase signature 38 57 - -
Ssu5g0702 434 PRINTS FAD-dependent pyridine nucleotide reductase signature 160 178 - -
Ssu5g0702 434 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 26 422 - -
Ssu5g0702 434 Pfam Flavin-binding monooxygenase-like 40 356 IPR020946 GO:0004499|GO:0050660|GO:0050661
Ssu5g0702 434 SUPERFAMILY FAD/NAD(P)-binding domain 39 271 IPR036188 -
Ssu5g0702 434 PRINTS Pyridine nucleotide disulphide reductase class-II signature 200 224 - -
Ssu5g0702 434 PRINTS Pyridine nucleotide disulphide reductase class-II signature 37 59 - -
Ssu5g0702 434 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA6 26 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0702 Ssu-Chr5 17141711 17147117 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0702 K11816 - gmx:100804746 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0702 5 17141711 17147117 Ssu5g0702 5 17141711 17147117 ECH