Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0699 atgaaaCTTTCAGTCAGCGCCACTCCAAAGAGCACCAAAAACCGCTTCGTCGGTTCGTCCTGTCCCGTCTCTTCAACATGGCGCTCCGCTCGACGTGAAACACCATTCAAAGCATTCTGCGACGTCGTATCGTATGCATCATTCTCACGGCTAGCGCAAGGCGAAGAAGAAGAACCCACACTTCTCGTTCTTCGCACCCCCCCACCACCCTCTTCCACTTCGACCATGGCTTCTCCTTCGCATCGCACCCGCATCAATCAGTTTTACGCTTCGAAGAAAAGGAAAGCCGCGTCACCTGTTCCTAAAGCTGGGAGATCCGAAAAAGGCGCGAGGCACGGGGCTGATGCGTCTCCAAGTGCCAAAGGCACTTTAGGCGGTTACTTGGTTACGTCGCAGGATGGTGGTGACGACGGCGCTGCGAACACGGCGGCCGCGGCTCGGCCGGATTCGGTTAAGAGAAATTTGGCATCAGAAATTGGTAGTTCTCTTGACAATGAAGTTAATAAGCACACTGTTTCATCGGCTCAAGGGTGTGGGGATGCTCAATCTGCTAGGCCAGGTGCGGCGAATTCGGAGCTCAAGCAGTTTGCAGCTGACTTTTTGTCTCTGTATTGCAGTGAATTGCAGCCAAGCATGGATTTGCCGACGGAGATGAAAGTGGATGACCACAAGGGACATGGTTCCCTGGCATTAGTAGAGGGAAATAGTGGTTTACCTCAGAAGAATAATGACAGTGCGGGTGAGTCACGTTTTGGTGGTGAAAATGTATTGCCGAGTGACAAGATCAATGAGGACATCAAGTCTGGTGTTGTTGGTGATACTGTGGGATATGTTCCTGGCTCTTGTACGAAGGTTTCTGGTGGTGGTGATACTACTACTGCCTTTGAGACAGGCTTTAGAAAATGTAGTAATACACCTAAACCATCTATGAATATGGGTGAATGCTACACGCCAGGGTCTTTGGTTGTTAAAGCAGGTGTTAAGGAGACTCCAAAGTCAACACGCGGCAGCTCATCGTTTTCGCCTGGAGAGGCGTTTTGGAATGAGGCAATTCAACTTGCTGATGGTTTGTGTGTTCCCATGGATAATGATTCTTCTAAGGTTATGGGAGAAAGTAACGTGGTGGAAGAGGAACCTGAGATGAAGAACTCAtgcaatttacaaaattatgatggCAAGCCAAGGAAAATATTGGATCAAAGTAAAAACAGAATCTGGAATCCGGAAATGGGTACTCCTTTAGGGTCAGTTGGGATGCCCACAAAAGATTCTGTGAAAGAAGCATCTAGCCTTCCTGTTAAACATTTTGATTTTTCGTTTGAGGACAACAATTTGGAAGAAAATACCTTGCAAAATTGTCGTGCTGATGATCTGATCAATGTTACTTGTGGGGCTGGTAAACAGGATGAATCAGGTTCTATGACAGGTCATACATATGAAAAGATGGATGAAGTGCAAGAGAAGACTTTAGTAGATACATTAGGCAAAAGGGTTTGTCAGGATAATGTTAGTATGACATCTAATTCACCTGACAATGAGGTCAGGACACCGATTAGGGCACATGCATCTGATGAAGCCAGTACTCCCTCAACTAGTGTATCACTCAATGATCATTTTGACCTAAATAGCTGGCTTCCTCCTGAAATTTGCGGCATATATAGAAAGAAAGGAATCTCAAAGCTTTACAATTGGCAGgTTGACTGCCTTCGAGTGAATGGTGTCCTACACAGAAGAAATCTTGTATATTGTGCTTCCACAAGTGCTGGTAAGAGTTTTGTTGCTGAGATTTTAATGCTGCGGAGGGTGATAATAACTGGAAAAATGGCACTACTTGTTCTTCCATATGTATCAATTTGTGCAGAAAAGGCAGAACACCTTGAACGTCTCCTTGAGCCACTTGGTAAACATGTTCGTAGTTATTATGGAAACCAAGGTGGTGGAACACTTCCTAAAGATACTTCTGTAGCTGTCTGCACAATAGAGAAGGCAAACTCACTAATTAATAGACTATTGGAAGAGGGCCGTCTATCAGAAATGGGAATTATCGTGATTGATGAACTGCATATGGTTGGTGATCCAAGTAGAGGTTATCTTCTAGAACTTATGTTGACAAAGCTTCGTTATGCAGCAGGGGAAGGTATTTCAAAATCAAGTGATGGGGAAAGTTCAGGTGGAAGCAGTGATAAGGCTGATCCTGCACAAGGTCTGCAAATTGTCGGAATGAGTGCAACAATGCCAAATGTTGCAGCAGTTGCTGACTGGCTTCAAGCAGCACTATACCAAACAGAGTTCCGGCCAGTTCCTCTAgaagaatatataaaagttgGTAATTCCATTTATAACAGAAACATGGAACTTTCTAGAACAATCTCAAAAGCGGCTGACCTTGGTGGTAAAGATCCAGATCATGTTGTTGAACTATGTAATGAGGTTGTTCAAGAGGGACAATCAGTGTTAATATTTTGCTCTAGTCGGAAGGGTTGTGAATCAACTGCTAAGCACATTGCGAAGTTTCTTAAAAGCTTTACTATTGATGTTAATGATAATGATTCTGAGTTTGCTGATGTTAGTTCTGCTATTAACTCCTTGGGAAAGTGCCCTGCTGGGTTGGACCCCATATTAGAGGAAATTCTTCCTTCTGGTGTTGCATTTCACCATGCTGGCCTTACGGTTGAGGAACGAGAGATTGTTGAAACTTGTTATCGAAAAGGCCTTTTACGTGTCTTAACTGCCACATCAACTTTAGCAGCTGGGGTAAATCTTCCAGCTAGGAGGGTAATTTTTCGCCAACCTAGAATTGGTTGTGATTTTCTAGATGGTACGAGGTACAAACAGATGGCTGGTCGTGCTGGTCGAACTGGAATTGATACAAAAGGAGAAAGTATACTTATCTGCAAAcctgaagaaataaaaaaagttacagGACTTCTTAATGAAAGCTCTCCTCCATTACGTTCCTGTTTATCAGAAGATATAAATGGAATGACTCATGCAATCTTAGAAGTAGTGGCTGGAGGAATAGTTCAAACTGCTAGCGATATTAACCGGTATGTTAGATGTACTCTTTTGAATTCTACTAAACCATTTCTAGACGTGGTGAAATCTGCACAAGAATCCCTTCGATGGTTGTGCCAAAGAAAATTTCTTGAATGGAATGAAGACACTAAACTCTACAGCACCACACCTCTTGGACGTGCATCTTTTGGCAGTTCTCTTTGTCCAGAAGAATCACTTATTGTGTTAGCTGATCTTTCAAGGGCAAGGGAAGGATTTGTCCTTGCATCTGACTTGCATTTAGTTTACTTGGTGACACCAATCAATGTTGATGTTGAGCCAAATTGGGAATTGTACTATGAGCATTTTGTGAAATTGTCTCCTCTGGACCAGTCAGTTGGCAATCGAGTAGGTGTGACAGAACCATTCTTGATGCATATGGCACATGGCGCACCACTACGTTCTTCAAACAAGTCAAGAGATAATACAAGATCATTGCACAATAAACGAAGAAATCAACTTGGGATTTCCAATGCAACGGTTAACTATGATGGTCAAACACTTCGTGTTTGTAGAAGATTCTATGTTGCTCTCATTTTGTCACTTCTAGTTCAGGAAACTCCTGTGGGTGAGGTTTGTGAAGCATTTAAAGTTGCCAGGGGAATGGTTCAAGCCTTGCAAGAGAATGCTGGTAGGTTTGCATCTATGGTTGCTGTGTTTTGTGAGAGACTTGGGTGGCATGATCTTGAAGGCTTAGTTGCTAAGTTTCAAAACCGTGTATCATTTGGAGTCAGAGCAGAGATTGTAGAACTTACCACCATTCCCTATGTTAAAGGTTCTCGAGCCAGAGCACTCTATAAAGCAGGTTTACGTACACCTCTTGCAATTGCTGAAGCATCCATTCCTGAGATAGTAAAAGCACTTTTTGAATCTTCATCATGGGCCACAGAAGGTTCGGCACAAAGGAGCTTACAATTTGGTGTagcaaaaaagataaagaatggTGCTCGGAAGATTGTTCTTGATAAAGCTGAGGAGGCAAGGAATGCTGCTTTCTCAGCCTTTAAGTCACTTGGGTACGATGTCCCACGGTTTGCTCCTCCCATATTATCTACTGCTGCTCGTGATTCTATCAGGCAAGAAGCTGGAAGTACCTCTGGAAGTGACACAACTGATACTAGTCTTAGTTTTGTCGATGCAAATTGCGTTgataattctaataaatttgctttagataaagaaagagaagagttaataaaattatctgttaaTGGTGCTCTGGCTTCTGTAGAAGGAAAATCAAGCAGCGGGATGATATGTAGCTTGTCTACTGTTCCAGTTGCAGGACCTACAATGGAAGAGCTCAATGGGACTTTTGACCATACCAAAAACCCAGATGTGACCACTATCTCTGTTCAATTACACAAACCAAATGATAAATCTGGTGTACATGATGGGTGCCAGGCTCATTGTACAGAGGAACAacataaaaatggaaatttggCTAGTGGGAATGCTGGTAGTTCCAGCCAGAAAGGTCCCATTAATGCAGTTAGTAGTCCTGGCGGGCTTGATGCATTTTTGGATCTATGGGACACTATGCCAGAGTTCTACTTTGATATCCATTACATCAAACGATTGGAATTACACTCTGCTGTCCCCTTCGAAATGCATGGCATAGCTGTTTGTTGGGAGAAGTCTCCTGTGTACTACATTAATCTTCCCAGAGATATTCTGTTGTCTGACAATAGAAAAGATGGCTGTTTATCCTTGAGCGCATGCAGTCATAAGCAGAAAGTTTCATCTTCTAATTCTAAGCAAGATTTAGCAATTGCTAGATATAGATGGAGCagaattagtaaaataataggGAAAATAAATGCCAGAAAGTTCACCTGGAATTTGAAGATTCAGATTCAGGTGCTGAAGAGGCCTGCATTTTCAGTCCAGAGATTTGGTTGCTTGGACACACTTGGAAAAAGTATGGACCTTGAAGTTGTAGACAATTCTTACGTGTTATTGCCCCCAATCCATGTTAAAGATGCAATTGATATGTGCATTGTGGCTTGGATTCTTTGGCCTGATGAAGAGAGGAGCTCTAGTCCAAACCTGGATAAGGAGGTAAAGAAGAGGTTATCCTCTGAAGATGCTGCACTGGCCAATCAGAGTGGCAGGTGGAGGAATCAGATGCGAAGGGCTGCTCATAATGGTTGCTGCCGTCGGGTTGCTCAAACACGAGCATTATGTTATGTTCTTTGGAAATTACTTGTTTCTGAGGAACTTGTTGAAGTGCTTATGGGAATAGAAATCCCGTTGGTGAATGTTCTTGCTGACATGGAGCTTTGGGGAATTGGTGTTGATTTGGAGAGATGCATCCAGGCTCGTAAATTGTTGGTTAAAAGGCTAAAGCATCTTGAGAAGGAAGCTTATAAACTGGCTGGGATGACATTTTCATTACATATGCCAGCAGATATTGCAAAGGTGCTGTATGAACACTTGAGGCTGCCCATACCTGATGGGCGAAATAAGGGAAAACAACATCCGAGTACTGGCAAGCACTGTTTGGATGCACTGAGGCATGAACATCCCATTGTCCCAGTCATTAAAGAACATCGAACAATGGCAAAGCTGTTAAACTCTACGCTAGGATCAATTTGTTCTCTGGCTAGACTTTCTGTAAGCACACAAAAGTACACGTTACATGGTCATTGGCTCCAGATATCCACAGCAACTGGTCGGCTTTCAATGGAGGAACCTAATCTTCAGTGCGTTGAGCATACAGTAGACTTCAAAATGAAAGAGGAGGAAAATGAAGGTGATGCTGATGAGAGTTATTGTAGAATTAATGCTCGCGATTTCTTTGTTCCTACTCAGGACAACTGGTTTCTGCTAACAGCAGATTATTCTCAGATAGAATTGCGATTGATGGCACACTTCTCTAAAGATTCTTCACTTATTGAACTTCTCAGTAAGCCTGATGGTGATGTCTTTACAATGATAGCAGCAAGATGGACTGGGTGTTCTGAGGTTTCTGTGGGTTCACGGGAGAGAGATCAGACCAAAAGGATGGTGTATGGCATTCTTTATGGTATGGGTGTCAATAGCCTTGCAGAGCAACTGGATTGCTCTTCTGATGAAGCTGCTGAAAAGATTGCTAACTTCAAAAGCTCTTTTCCTGGTGTTGCTTCCTGGCTTCATGAAGCCGTTGCATCTTGTCGTAGTAAAGGATATGTGGAGACTCTTAAGGGAAGAAAAcgttttttgtcaaaaataaaattgggcaGCAGTACAGAAAAATCAAAAGCTCAGAGGCAAGCTGTAAATTCCATTTGTCAGGGATCTGCGGCTGACATAATTAAGATTGCAATGATAAGAATTTACTCTGCAATTGTCGCCGGATTTGGTAGTCTGGATTCCAGTTCTTCAGTAGCAACCAAATTTCACATGCTTAAAGATCGTTGCCGGATTCTGTTACAGGTACACGATGAATTAGTGTTGGAAGTTGATCCTTCTGTGATAAAAGAAGCTGCCCTATTATTACAGACAAGCATGGAGAATGCGGTCTCACTTCTTGTTCCTTTGCATGTCAAACTTAAGGTTGGAAGAACATGGGGATCTTTGGAGCCATTTACACCTGATAAACTCAAGGATGACACTATTGTCGCTGAATCCTGA 6669 0.4182 MKLSVSATPKSTKNRFVGSSCPVSSTWRSARRETPFKAFCDVVSYASFSRLAQGEEEEPTLLVLRTPPPPSSTSTMASPSHRTRINQFYASKKRKAASPVPKAGRSEKGARHGADASPSAKGTLGGYLVTSQDGGDDGAANTAAAARPDSVKRNLASEIGSSLDNEVNKHTVSSAQGCGDAQSARPGAANSELKQFAADFLSLYCSELQPSMDLPTEMKVDDHKGHGSLALVEGNSGLPQKNNDSAGESRFGGENVLPSDKINEDIKSGVVGDTVGYVPGSCTKVSGGGDTTTAFETGFRKCSNTPKPSMNMGECYTPGSLVVKAGVKETPKSTRGSSSFSPGEAFWNEAIQLADGLCVPMDNDSSKVMGESNVVEEEPEMKNSCNLQNYDGKPRKILDQSKNRIWNPEMGTPLGSVGMPTKDSVKEASSLPVKHFDFSFEDNNLEENTLQNCRADDLINVTCGAGKQDESGSMTGHTYEKMDEVQEKTLVDTLGKRVCQDNVSMTSNSPDNEVRTPIRAHASDEASTPSTSVSLNDHFDLNSWLPPEICGIYRKKGISKLYNWQVDCLRVNGVLHRRNLVYCASTSAGKSFVAEILMLRRVIITGKMALLVLPYVSICAEKAEHLERLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDPSRGYLLELMLTKLRYAAGEGISKSSDGESSGGSSDKADPAQGLQIVGMSATMPNVAAVADWLQAALYQTEFRPVPLEEYIKVGNSIYNRNMELSRTISKAADLGGKDPDHVVELCNEVVQEGQSVLIFCSSRKGCESTAKHIAKFLKSFTIDVNDNDSEFADVSSAINSLGKCPAGLDPILEEILPSGVAFHHAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGCDFLDGTRYKQMAGRAGRTGIDTKGESILICKPEEIKKVTGLLNESSPPLRSCLSEDINGMTHAILEVVAGGIVQTASDINRYVRCTLLNSTKPFLDVVKSAQESLRWLCQRKFLEWNEDTKLYSTTPLGRASFGSSLCPEESLIVLADLSRAREGFVLASDLHLVYLVTPINVDVEPNWELYYEHFVKLSPLDQSVGNRVGVTEPFLMHMAHGAPLRSSNKSRDNTRSLHNKRRNQLGISNATVNYDGQTLRVCRRFYVALILSLLVQETPVGEVCEAFKVARGMVQALQENAGRFASMVAVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASIPEIVKALFESSSWATEGSAQRSLQFGVAKKIKNGARKIVLDKAEEARNAAFSAFKSLGYDVPRFAPPILSTAARDSIRQEAGSTSGSDTTDTSLSFVDANCVDNSNKFALDKEREELIKLSVNGALASVEGKSSSGMICSLSTVPVAGPTMEELNGTFDHTKNPDVTTISVQLHKPNDKSGVHDGCQAHCTEEQHKNGNLASGNAGSSSQKGPINAVSSPGGLDAFLDLWDTMPEFYFDIHYIKRLELHSAVPFEMHGIAVCWEKSPVYYINLPRDILLSDNRKDGCLSLSACSHKQKVSSSNSKQDLAIARYRWSRISKIIGKINARKFTWNLKIQIQVLKRPAFSVQRFGCLDTLGKSMDLEVVDNSYVLLPPIHVKDAIDMCIVAWILWPDEERSSSPNLDKEVKKRLSSEDAALANQSGRWRNQMRRAAHNGCCRRVAQTRALCYVLWKLLVSEELVEVLMGIEIPLVNVLADMELWGIGVDLERCIQARKLLVKRLKHLEKEAYKLAGMTFSLHMPADIAKVLYEHLRLPIPDGRNKGKQHPSTGKHCLDALRHEHPIVPVIKEHRTMAKLLNSTLGSICSLARLSVSTQKYTLHGHWLQISTATGRLSMEEPNLQCVEHTVDFKMKEEENEGDADESYCRINARDFFVPTQDNWFLLTADYSQIELRLMAHFSKDSSLIELLSKPDGDVFTMIAARWTGCSEVSVGSRERDQTKRMVYGILYGMGVNSLAEQLDCSSDEAAEKIANFKSSFPGVASWLHEAVASCRSKGYVETLKGRKRFLSKIKLGSSTEKSKAQRQAVNSICQGSAADIIKIAMIRIYSAIVAGFGSLDSSSSVATKFHMLKDRCRILLQVHDELVLEVDPSVIKEAALLLQTSMENAVSLLVPLHVKLKVGRTWGSLEPFTPDKLKDDTIVAES 2222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0699 2222 MobiDBLite consensus disorder prediction 227 259 - -
Ssu5g0699 2222 MobiDBLite consensus disorder prediction 716 730 - -
Ssu5g0699 2222 SMART helicmild6 872 954 IPR001650 -
Ssu5g0699 2222 MobiDBLite consensus disorder prediction 1 23 - -
Ssu5g0699 2222 CDD SF2_C_Ski2 765 966 - -
Ssu5g0699 2222 SMART ultradead3 557 776 IPR014001 -
Ssu5g0699 2222 Coils Coil 1786 1806 - -
Ssu5g0699 2222 Gene3D - 1907 2202 - -
Ssu5g0699 2222 Gene3D - 1514 1778 IPR036397 GO:0003676
Ssu5g0699 2222 Gene3D - 1969 2113 - -
Ssu5g0699 2222 Gene3D - 1140 1285 - -
Ssu5g0699 2222 SUPERFAMILY DNA/RNA polymerases 1759 2205 IPR043502 -
Ssu5g0699 2222 CDD DEXHc_POLQ-like 545 766 - -
Ssu5g0699 2222 Pfam Helicase conserved C-terminal domain 803 954 IPR001650 -
Ssu5g0699 2222 PANTHER DNA POLYMERASE THETA 561 2210 - -
Ssu5g0699 2222 SMART polaultra3 1945 2170 IPR001098 GO:0003677|GO:0003887|GO:0006260
Ssu5g0699 2222 PRINTS DNA-polymerase family A (pol I) signature 1898 1920 IPR002298 GO:0003887|GO:0006261
Ssu5g0699 2222 PRINTS DNA-polymerase family A (pol I) signature 2153 2166 IPR002298 GO:0003887|GO:0006261
Ssu5g0699 2222 PRINTS DNA-polymerase family A (pol I) signature 2074 2085 IPR002298 GO:0003887|GO:0006261
Ssu5g0699 2222 PRINTS DNA-polymerase family A (pol I) signature 2052 2063 IPR002298 GO:0003887|GO:0006261
Ssu5g0699 2222 PRINTS DNA-polymerase family A (pol I) signature 2015 2040 IPR002298 GO:0003887|GO:0006261
Ssu5g0699 2222 MobiDBLite consensus disorder prediction 56 151 - -
Ssu5g0699 2222 Gene3D Taq DNA Polymerase; Chain T, domain 4 1781 1890 - -
Ssu5g0699 2222 PANTHER DNA POLYMERASE I 561 2210 IPR002298 GO:0003887|GO:0006261
Ssu5g0699 2222 Pfam DNA polymerase family A 1788 2203 IPR001098 GO:0003677|GO:0003887|GO:0006260
Ssu5g0699 2222 Pfam Helix-turn-helix domain 959 1050 IPR046931 -
Ssu5g0699 2222 SUPERFAMILY Sec63 N-terminal domain-like 1177 1299 - -
Ssu5g0699 2222 Gene3D - 545 766 IPR027417 -
Ssu5g0699 2222 Pfam DEAD/DEAH box helicase 574 747 IPR011545 GO:0003676|GO:0005524
Ssu5g0699 2222 MobiDBLite consensus disorder prediction 235 249 - -
Ssu5g0699 2222 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 571 763 IPR014001 -
Ssu5g0699 2222 CDD DNA_pol_A_theta 1781 2205 - -
Ssu5g0699 2222 MobiDBLite consensus disorder prediction 714 733 - -
Ssu5g0699 2222 Gene3D - 774 974 IPR027417 -
Ssu5g0699 2222 MobiDBLite consensus disorder prediction 67 86 - -
Ssu5g0699 2222 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 803 1000 IPR001650 -
Ssu5g0699 2222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 968 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0699 Ssu-Chr5 16923519 16956381 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0699 K02349 - gmx:100813857 3742.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0699 5 16923519 16956381 Ssu5g0699 5 16923519 16956381 ECH