Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0672 ATGTATGAACCAAAAAATATCCTCATAACTGGAGCAGCTGGTTTCATAGCCTCCCATGTCACAACCAGGCTAATTGACAAGTACCCTGGCCACAAGATTGTAGCTCTTGATAAGCTAGATTATTGCTCTACTTTCAAGAATCTGCAGTCATGTACTTCATCACCAAAGTTTAAATTCATCAAGGGTGATATAGCTAGTGCTGATATTGTGAATCATATTTTGATAGAAGAGGAAATAGACACCATTATGCATTTTGCTGCTCAAACCCATGTGGACAATTCATTTGGAAACTCCATGGAATTTACCTACAACAATATCTATGGCACTCATGTGCTTCTTGAAGCCTGCAGGGTCACCAACTGTGTCAAAAGGTTCATTCATGTTAGCACAGATGAAGTCTATGGTGAAACAGACTTAGAGGCTGATATTGGAAATCATGAGACATCTCAGCTTCTACCAACAAATCCTTATTCTGCAACAAAAGCAGGTGCAGAAATGTTGGTCATGGCTTATCACAGGTCTTATGGTCTTCCAATTATAACTTCTAGAGGCAATAATGTGTATGGTCCCAACCAGTACCCAGAAAAGCTTGTTCCTAAGTTCATTCTTCTTGCCATGAAGGGTGAGAAATTGCCAATCCATGGAGATGGATCCAATGTCAGGAGCTACCTCCACTGTGGGGATGTGGCAGAAGCTTTTGACGTCATACTTCACAAAGGAGAGATTGGCCAAGTATACAATATTGGCACTAAGAAGGAAAGGAGTGTGTTAGATGTTGCAGAGGAAATCTGCAAACTCTTTAAATTGAATCCTAAAGATGTTATTGAGTTTGTTCAAGATAGGCCTTTCAATGACCAGAGATATTTCCTAGATGatcaaaagctaaaacaacTTGGTTGGGAGGAGAGAACTACTTGGGAGGAAGGACTTAAGATGACAATTGATTGGTACAAAGAGAACCCTGATTGGTGGGGTGATGTATCCACTGCTTTAAACCCGCATCCGCGTTTCTCAGCCATCAATCTCTCTGATGAAGCTCAATGGTCCTTTCAATATGGATACTCAAGGCTTGCAAGGTCATTTACTGAAGTTGGTAGGAACAATTCAGGATTCAAGTTCTTGATATATGGGAGGACAGGTTGGATAGGGGGGTTGTTGGGAAAGCTTTGTGATGAAGAGAGAATTAATTGGGAATATGGGAGAGGAAGATTGGAAGATAGGAAATCACTTATGGAGGATATAAGGAGGGTAATGCCAACCCATGTGTTAAGTGCAGCTGGTGTTACTGGAAGGCCTAATGTTGATTGGTGTGAATCACACAAGGTTGAAACAATAAGGACTAATGTAGTGGGAACTTTAACACTGGCTGATGTTTGCAAGGAACATGGCTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGATAAAGACCATCCTCTAGGATCAGGCATTGGTTTCAAGGAAGAGGACAAGCCAAATTTCATTGGTTCCTTCTATTCAAAGACCAAGGCCATGGTGGAGGACCttctaaaaaattatgacaatGTATGCACATTGAGAGTTAGAATGCCAATATCCTCAGATCTTAGCAATCCAAGAAACTTCATCACAAAGATTTCTCGTTACAACAAGGTGGTAAACATACCTAATAGCATGACAGTGCTAGATGAGCTCTTACCCATATCCATTGAAATGGCTAAGAGGAACTTAAGAGGGATATGGAACTTCACCAACCCAGGAGTCATTAGCCACAATCAGATATTAGAATTGTATAGGGATTACATAGACCCACAATTTAAATGGGAGAATTTTGATTTGGAAGAACAAGCAAAGGTAATAGTTGCTCCCAGAAGTAACAATGAAATGGATGCTTCCAAGCTCAAAAATGAGTTCCCAGATTTGTTGTCCATCAAAGATTCCATTATCAAGTTTGTCTTTGAGCCTAACAAGAAAACTTGA 1968 0.3953 MYEPKNILITGAAGFIASHVTTRLIDKYPGHKIVALDKLDYCSTFKNLQSCTSSPKFKFIKGDIASADIVNHILIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTNCVKRFIHVSTDEVYGETDLEADIGNHETSQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVYGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLHCGDVAEAFDVILHKGEIGQVYNIGTKKERSVLDVAEEICKLFKLNPKDVIEFVQDRPFNDQRYFLDDQKLKQLGWEERTTWEEGLKMTIDWYKENPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGYSRLARSFTEVGRNNSGFKFLIYGRTGWIGGLLGKLCDEERINWEYGRGRLEDRKSLMEDIRRVMPTHVLSAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEHGLYMMNFATGCIFEYDKDHPLGSGIGFKEEDKPNFIGSFYSKTKAMVEDLLKNYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVISHNQILELYRDYIDPQFKWENFDLEEQAKVIVAPRSNNEMDASKLKNEFPDLLSIKDSIIKFVFEPNKKT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0672 655 CDD dTDP_GD_SDR_e 5 322 IPR005888 GO:0008460|GO:0009225
Ssu5g0672 655 CDD dTDP_HR_like_SDR_e 372 644 - -
Ssu5g0672 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 369 646 IPR036291 -
Ssu5g0672 655 Gene3D - 198 320 - -
Ssu5g0672 655 Gene3D - 7 311 - -
Ssu5g0672 655 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 328 IPR036291 -
Ssu5g0672 655 Pfam RmlD substrate binding domain 372 542 IPR029903 -
Ssu5g0672 655 Gene3D - 363 655 - -
Ssu5g0672 655 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 2 653 - -
Ssu5g0672 655 Pfam GDP-mannose 4,6 dehydratase 8 313 IPR016040 -
Ssu5g0672 655 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 2 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0672 Ssu-Chr5 15955369 15957919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0672 6 317 Miscellaneous Gene Families AT1G02000 25.749 5.97e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0672 K12450 - gmx:100776241 1302.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0672 5 15955369 15957919 Ssu5g0672 5 15955369 15957919 ECH