Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0667 ATGCTTCAAACTCACATTAACGTTTTCTCTTCCTTCACCGCTCCACTTCATTCCTCGCGCGTCCGTTCTTCTTCCGCTCCGACACGGCGTCGTTTGGCCAAAACCGCCACTCCTCACGAGACCAATCTCAGGCACCTCACTTCGCGCATTGTTCAACTCACTCGCCGAAAACAGCTTCGCCAGATTTTGGATGAGACCGAGGCTGCGAAGAGGCATTTCGGGAAGCTGAACACGATAGTGATGAACGCGGTGATGGAGGCTTGTGTTCGTTGCGGTGACGTCGATTCGGCGCTTAGGATATTCGATGAGATGAAAAACCGCGATGGTTGTGGTGTGGATACTGTCACCTATGCCACGCTTTTGAAGGGTTTGGGTGAGGCGCGAAGAGTCGATGAGGCTTTTGAATTGCTTGAAACTGTGGAAAATGGCACTGCCATGGGAGGTCCAAACTTGTCAGCTCCATTGATATTTGGTCTGCTAAATGCCTTAATCGAAACAGGAGACTTGCGTCGTGCAAATGGTCTCCTTGCCTGTTATGGTTTTGTGCTTCGTGAAGGTGGCAATTTTTCAGTCTCGGTATACAACATACTGATGAAGGGCTACATAAACTCAGGCTGTCCACACACTGCAATAAACGTGCTCAATGAAATTTTACGTCAAGGTGTAATGCCTGACAGGCTCACGTATAACACACTAATTTTAGCGTGTGTTGAGAGTAAAAAGTTGGATGCTGCAATGCAATTTTTTGAGGAAATGAAGGGCAAAGCACAGAAATTCGTCAATGATGATCTGTTTCCAGATATTGTTACATATACAACATTGCTTAAGGGTTTTGGGAAAGCGAAGGATCTTGCTTCAGTTCTGAAAATAGTGCTGGAAATGAAATCTTGTCATGAATTATACATTGATAGAACTGCTTACACTGCAATAGTTGATGCTTTACTAAAATCTGGCTCAGTGAAGGGTGCACTGTGTATTTTTGGAGAAATACTGAAGCAGGCTGGTCTGAATCCAAAGTTGAGGCCAAAGCCTCACCTCTATCTTTCCATGATGCGTGCCTTTGCTTTTCTAGGAGATTATGATCTAGTTAAAAATTTGCATAAACGAATTTGGCCAGATTCAGCAGGAACCATACTATTAGTTGCTCAAGAAGAAGCTGATCACCTTCTCATGGAAGCAGCACTGAATGCTGGCCAGGTTGATGTTGCCATTAAAACTCTCACTGAGATTGTTTCAAGATGGAATGGCATATCCTGGACAAGTCGTGGGGGCATGGTTGCTTATCGTATTGAGGCCATATTGGGATTCTCAAAGTCATTATTCAGTCCTCACTTACTTCCTCAGGTTTCACCTTCTGAACCAGTTGAGAATTATATGATACGATTTGAAGCAACACGGCCACTACAAGGTACCATAAAGCTGAGGGAAGTGGTTATGCGTTTTTTTGATGAAGCAGTTGTTCCTATTGTAGATGAGTGGGGCAGTTGTACAGGGCTGTTGCACCGTGAAGACTGTAACCAGTTGGATGCTTCACTTTCAACAATGATGAGAAGCCCCCCTCCCAGTGTTACGACTTCAACATCTGTTGGTCATGTAgttgatttaattttagagaagCGATACCCAATGGTTATCATTGTAAATTACACAAACTCATATGCTACTACTCCATACAGCTCTAGAGCAGTTGGGGTTTTTACATCAGAACAATTGAGTAGGTTTATCATACCTGTATCCCAAGTAAAAGGGACAGATCTTTCAGTCTACAAAAGGTAA 1776 0.4347 MLQTHINVFSSFTAPLHSSRVRSSSAPTRRRLAKTATPHETNLRHLTSRIVQLTRRKQLRQILDETEAAKRHFGKLNTIVMNAVMEACVRCGDVDSALRIFDEMKNRDGCGVDTVTYATLLKGLGEARRVDEAFELLETVENGTAMGGPNLSAPLIFGLLNALIETGDLRRANGLLACYGFVLREGGNFSVSVYNILMKGYINSGCPHTAINVLNEILRQGVMPDRLTYNTLILACVESKKLDAAMQFFEEMKGKAQKFVNDDLFPDIVTYTTLLKGFGKAKDLASVLKIVLEMKSCHELYIDRTAYTAIVDALLKSGSVKGALCIFGEILKQAGLNPKLRPKPHLYLSMMRAFAFLGDYDLVKNLHKRIWPDSAGTILLVAQEEADHLLMEAALNAGQVDVAIKTLTEIVSRWNGISWTSRGGMVAYRIEAILGFSKSLFSPHLLPQVSPSEPVENYMIRFEATRPLQGTIKLREVVMRFFDEAVVPIVDEWGSCTGLLHREDCNQLDASLSTMMRSPPPSVTTSTSVGHVVDLILEKRYPMVIIVNYTNSYATTPYSSRAVGVFTSEQLSRFIIPVSQVKGTDLSVYKR 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0667 591 Gene3D Tetratricopeptide repeat domain 261 431 IPR011990 GO:0005515
Ssu5g0667 591 Gene3D Tetratricopeptide repeat domain 152 260 IPR011990 GO:0005515
Ssu5g0667 591 TIGRFAM PPR: pentatricopeptide repeat domain 228 253 IPR002885 -
Ssu5g0667 591 TIGRFAM PPR: pentatricopeptide repeat domain 269 297 IPR002885 -
Ssu5g0667 591 TIGRFAM PPR: pentatricopeptide repeat domain 115 138 IPR002885 -
Ssu5g0667 591 TIGRFAM PPR: pentatricopeptide repeat domain 193 225 IPR002885 -
Ssu5g0667 591 TIGRFAM PPR: pentatricopeptide repeat domain 81 113 IPR002885 -
Ssu5g0667 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 297 IPR002885 -
Ssu5g0667 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Ssu5g0667 591 CDD CBS_pair_SF 471 548 - -
Ssu5g0667 591 Pfam PPR repeat family 191 236 IPR002885 -
Ssu5g0667 591 Pfam PPR repeat family 77 124 IPR002885 -
Ssu5g0667 591 Gene3D Tetratricopeptide repeat domain 31 144 IPR011990 GO:0005515
Ssu5g0667 591 Pfam Pentatricopeptide repeat domain 257 296 IPR002885 -
Ssu5g0667 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 143 IPR002885 -
Ssu5g0667 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 77 107 IPR002885 -
Ssu5g0667 591 SUPERFAMILY CBS-domain pair 454 551 IPR046342 -
Ssu5g0667 591 Pfam PPR repeat 306 332 IPR002885 -
Ssu5g0667 591 PANTHER OS09G0431600 PROTEIN 13 584 IPR044781 -
Ssu5g0667 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 338 IPR002885 -
Ssu5g0667 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Ssu5g0667 591 ProSiteProfiles CBS domain profile. 515 586 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0667 Ssu-Chr5 15676681 15690726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0667 159 460 Miscellaneous Gene Families AT4G11690 24.104 8.37e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0667 - - gmx:100813146 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0667 5 15676681 15690726 Ssu5g0667 5 15676681 15690726 ECH