Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0666 ATGGcaacaaaagcaaaagaaagtACTGTTGTTGGGAAGGAGAAGAAGGTTCCATCTTCAAATTCTCACATCACAACCACCAAAAGGACCACTAAACCATCCACAACAACAACCACTACCACCTCCACTAACAAGCCCAACTCAAACCCATCAGAGAAAAACATCCCCAACTATCTCAAGCCCACAATAACCTCACGCCTTGAGTCCCCCTCTTCCAAACAGCCCAAGAGTGACTCTCCCAACAATAAGCCTTCTCCAATCAGAAGAAGATCCTTCGACAAACCACTTTCCTCTTCAAACTTGACCAAATCTGCACCACGTAGATCTTCCATTGATACAGTTACTAAAAGCACCAACCCTTCCAAACCCATTTCAGATAGGACCTCAAAGGCCCCAAGTGATGGAAAAACTAAGCCACTAGTCACAAAGAACACAAAGAAAACCACCCCTACTACTTCTACAAGCACTAAGAAGGTACTAGCTAATAGGGATAGTGTTTCTGTTAACTCAACAAAAAGCACTCCTGAAGAAACTACAAGAACGTTAAGTGTTGAAACTGAGCAAGTTAAGGAAGTTACAAGTCAAGAAGTTGAAGTGATAAAGGTGGAGAATGAAGAACACAAAGTACACGAGGTTGAAGAACATGTGAGTGATATTTCACCTGATGTTGACTCTGAACATGAGATTGAACATGTTCACGGGCTTGAGAACTCTGATCCACCTCAGGATCAAGTTGATGATGAGAGGGTCATTTCTACAGTGTCAGAAGCAGAAATAGAGCCACAAGAAGAGAAAGCAAAAGATGAGGAACATGAATTAGAGGAAGATAAAGTAAACCAAGATGAAGGAGGCAACAATAATGAGAGTGATCATCAAGAAAAGCATTCTACAACTGAAGGAGAAGTTGCTGTTAATGATGAAGGTGAAGGTGAAGGTGAAGGTGGGGTAATTATAATAGAAGATCACAAAAGTgagaacaacaacaatgaaGAGGCAGTAGAGGAAAAAAAGGAAGCAGTTGAAAAAGCAGAAGAGGCCAAGGTTGAGGCAACACCACCAAAGCAACAATTAGGAGAAAGGAAACAAGGGCATAAGAAGGAGTCTCTATCCAATGATGTGATTGAGGAAACCGCAAGCAAGCTTTTGGAGGCAAGGAAGAACAAGGTGAGGGCATTGGCTGGGGCATTTCAAACTGTCATTGATCATCAAACCACATCAAAATGA 1224 0.4077 MATKAKESTVVGKEKKVPSSNSHITTTKRTTKPSTTTTTTTSTNKPNSNPSEKNIPNYLKPTITSRLESPSSKQPKSDSPNNKPSPIRRRSFDKPLSSSNLTKSAPRRSSIDTVTKSTNPSKPISDRTSKAPSDGKTKPLVTKNTKKTTPTTSTSTKKVLANRDSVSVNSTKSTPEETTRTLSVETEQVKEVTSQEVEVIKVENEEHKVHEVEEHVSDISPDVDSEHEIEHVHGLENSDPPQDQVDDERVISTVSEAEIEPQEEKAKDEEHELEEDKVNQDEGGNNNESDHQEKHSTTEGEVAVNDEGEGEGEGGVIIIEDHKSENNNNEEAVEEKKEAVEKAEEAKVEATPPKQQLGERKQGHKKESLSNDVIEETASKLLEARKNKVRALAGAFQTVIDHQTTSK 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0666 407 Pfam Plant calmodulin-binding domain 326 400 IPR012417 GO:0005516
Ssu5g0666 407 MobiDBLite consensus disorder prediction 358 372 - -
Ssu5g0666 407 PANTHER CALMODULIN-BINDING PROTEIN-LIKE PROTEIN 1 404 - -
Ssu5g0666 407 PANTHER EMB|CAB62594.1 1 404 - -
Ssu5g0666 407 Coils Coil 319 349 - -
Ssu5g0666 407 MobiDBLite consensus disorder prediction 211 302 - -
Ssu5g0666 407 MobiDBLite consensus disorder prediction 211 372 - -
Ssu5g0666 407 SMART CaM_binding_2 290 401 IPR012417 GO:0005516
Ssu5g0666 407 MobiDBLite consensus disorder prediction 138 189 - -
Ssu5g0666 407 MobiDBLite consensus disorder prediction 315 349 - -
Ssu5g0666 407 MobiDBLite consensus disorder prediction 1 189 - -
Ssu5g0666 407 MobiDBLite consensus disorder prediction 14 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0666 Ssu-Chr5 15672344 15673567 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0666 - - gmx:102666156 380.563