Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0650 ATGGTTGGATCAAGAAGCCGGCCACAGTTGAGGAGGCCTACTTGGATTATTGTTCTGCTGTCGATAGTGTGCGTGTTTCTGATTGCTGCCTACGTTTATCCGCCGCGGAGCCCCTCGTCGTGCTCCCTCTTTTACGGCCGCGGCTGTGGTGGTGGCACTTTTGATCTGCCGCCGGCTGCTCGGTCCCATGAATTGAGTGATGCGGAGAGAGAGTCTCGGGTTGTTATTAAGGAGATTCTGAACTATTATCCTGTGCAAACCAAGAAACCAAAAGttgcttttatgtttttgacTCCGGGTTCGCTGCCTTTCGAGAAGCTTTGGCACATGTTCTTTCAGGGCCATGAGGGCAAATtctctatttatatacatgCATCGAAGGAAAAGCCAATACATTTCAGCCCCTATTTTATTGGCCGAGACATTCACAGTGAACCGGTAAGCTGGGGAAAAATTTCTATGGTTGAGGCAGAAAGGAGACTTTTGGCAAATGCACTTTTAGACCCTGATAACCAACATTTTGTCTTGTTGTCTGAAAGTTGTATACCTGTGCGCCGCTTTGAATTTGTGTACAACTACTTATTATTAACAAATGTCAGCTTTATTGAcagCTATGTGGATACTGGTCCTCATGGAAATGGCAGGTATATAGAACATATGTTGCCTGAAGTAGAAAAAAAGGATTTTCGAAAGGGTTCACAGTGGTTCTCAATGAAACGGCAGCATGCTATAATAATTATGGCAGACAGTCtctattttacaaaattcaagCACCATTGCAGGGTACTATGTTCTTCACTGACAAAATTCTTCTGTTCATGTTTTAAACTTCAGCCAAATATGGAGGGAAACCGCAACTGCTATGCTGATGAGCATTACCTGCCAACCTTTTTTAATATGCTTGATCCAGGTGGAATCGCAAATTGGTCGGTAACATATGTTGATTGGTCTGAAGGAAAATGGCATCCAAGGTCATATAGAGCTCGGGATATTACTTATCAAGTCATGAAAAACATAGCGTACATTGACGAAAGTCCACATTTTACAAGTGATGCAAAGGTATGA 1065 0.4141 MVGSRSRPQLRRPTWIIVLLSIVCVFLIAAYVYPPRSPSSCSLFYGRGCGGGTFDLPPAARSHELSDAERESRVVIKEILNYYPVQTKKPKVAFMFLTPGSLPFEKLWHMFFQGHEGKFSIYIHASKEKPIHFSPYFIGRDIHSEPVSWGKISMVEAERRLLANALLDPDNQHFVLLSESCIPVRRFEFVYNYLLLTNVSFIDSYVDTGPHGNGRYIEHMLPEVEKKDFRKGSQWFSMKRQHAIIIMADSLYFTKFKHHCRVLCSSLTKFFCSCFKLQPNMEGNRNCYADEHYLPTFFNMLDPGGIANWSVTYVDWSEGKWHPRSYRARDITYQVMKNIAYIDESPHFTSDAKV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0650 354 Pfam Core-2/I-Branching enzyme 92 339 IPR003406 GO:0016020|GO:0016757
Ssu5g0650 354 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 3 353 - -
Ssu5g0650 354 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 3 353 IPR044174 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0650 Ssu-Chr5 15208788 15221708 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0650 - - gmx:100788165 641.343