Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0647 ATGGGCACGGCAGTGCGCCTCTGTGTTAGTTTCAATTCAACCTCTTCCAATCCTGCTCAAGGTTTTCATTTACCCACACTCGTCTCTGCATCGCATTCTCCTCACACTCTTTACTTACGCCGAAATTTTTCAGGTAGAAAATGCAAGTACGAAGGCCAATCAGTGAGAGCACTTCCTGTACGTATATTATCAGTGGGGAAGAAGAGATCACGTGGACTGCAACTCGTGGTTGATGAGTATGTTGATAAGCTCAGGTACTATTGCAGTGTTGAGGATGTTCAAATTCGGCCAAATCCTCGAAATGCACGTGACCAAAGGGCTCAGGTTGATGCTGAAGACGAGGCGGTGATGAACCTTATACGGTCTGATGATTGGGTTGTGATGTTGGATGAACATGGGCAAGACATAGGATCTGAGCAAATGGCAGAGTTGGTGGGTGATGCAGGAAATACTGGTGCTTCACGATTATCCTTTTGTATAGGTGGGCCCTATGGTCATGGAAGAAAAATGCGGGAACGGGCTAACTTATCAATCAAGTTATCTTCACTGGTCTTAAATCATCAAATAGCATTACTTGTGCTCATGGAACAGCTTTACAGGTCGTGGACAATTTTAAAAGGACAAAAGTACCATCATTAG 639 0.4444 MGTAVRLCVSFNSTSSNPAQGFHLPTLVSASHSPHTLYLRRNFSGRKCKYEGQSVRALPVRILSVGKKRSRGLQLVVDEYVDKLRYYCSVEDVQIRPNPRNARDQRAQVDAEDEAVMNLIRSDDWVVMLDEHGQDIGSEQMAELVGDAGNTGASRLSFCIGGPYGHGRKMRERANLSIKLSSLVLNHQIALLVLMEQLYRSWTILKGQKYHH 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0647 212 SFLD SPOUT Methyltransferase 46 212 - -
Ssu5g0647 212 Gene3D - 59 212 IPR029026 -
Ssu5g0647 212 CDD RlmH-like 60 212 IPR003742 GO:0006364|GO:0008168
Ssu5g0647 212 PANTHER METHYLTRANSFERASE 39 212 IPR003742 GO:0006364|GO:0008168
Ssu5g0647 212 SUPERFAMILY alpha/beta knot 59 210 IPR029028 -
Ssu5g0647 212 Pfam Predicted SPOUT methyltransferase 60 211 IPR003742 GO:0006364|GO:0008168
Ssu5g0647 212 Hamap Ribosomal RNA large subunit methyltransferase H [rlmH]. 58 212 IPR003742 GO:0006364|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0647 K00783 - gmx:100796609 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0647 5 15150641 15154545 Ssu5g0647 5 15150641 15154545 ECH