Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0643 ATGGCGATGCTATCCTCCAAGATATCATCATCACTATTCCTATCCCTATCACCCAAACTCACTTACCTTACCAACGCCTTTCTCCTTTCTCGTTCGACCGCCACCACCACAAAgcaaaagaacaagaaaaaggaGAACGCAAAAGCAGCGTTGGCGAAGGAGAAGCGCAGGACCCGTTCCGACAAACAATTCAACAAAGACGCAGTAATCGAGCGTTGCAACGTAAACGACACCGACACCAATTCCTCTCACATTCCCGTGATGCTGGGCGAAGTCCTCGACGTGTTCTCCACCTCCTCCTTGACCTCCTTCGTCGATTGCACCCTTGGCGCCGCGGGCCACTCCACCGCCGTGATTAGGGGTCATCCCGAGTTGAAGTGTTTCGTGGGGATGGATGTAGACTCTGTCGCGCACGACGTCGCGCAGCCTCGCCTTGACGCCGTTTTAAGTAGTGGTGTTAGAGCGTTTACCGTTTTGAGGAATTTTAGAGACGTCAAGTCTGTGCTAAGGGAAGTCGGTGAGATACAGTTGGGGGTTGACGGCATCTTAATGGACTTGGGAATGTCGTCTATGCAGgtGGATGATCCCACGAGAGGATTCAGTGTGCTTGGTGATGGACCCCTGGATATGCGTATGGATCCTCAGGCAAGTCTTAAAGCAGAAGACATATTAAATTCCTGGCCAGATTCTGAAGTTGGCCGTATCCTAAGGGAGTATGGGGAAGAAAGTAATTGGCGAACTCTGCAAAAGAAGATTGTTGATGCCCGATTACATGGTGGATTGCATTCAACTAGTGACTTGCTAGATCTTATTCGGCATGTTACTCCTCCAATGAAAGGTGGAAGGCAAGGTTGGATAAAGACTGCAACCCGGGTGTTTCAAGCTCTGAGAATCGCTGTTAATGATGAACTGAAGACACTTGAGGATTCCCTCCATTCTTGTTTTGATTGCCTTGCACCTGGGGGTAGGCTTGCTGTCATATCTTTTCATAGTCTAGAGGACAGAATTGTGAAGCAGACATTTCTTGATATCATTAAAGGGAGCGAAGATGTGGAAGAAAGGGAGAGCCTCAACAGTGATTTGAGGAAGACTAGTGatgaaatcaaagaaaaagaagcatGGATAAAACAAGTAATATATGGATCAAAGGGAACAATTCTCACAAAAAGACCAATCACGCCGtcaggagaagaagaaaaattgaacCGCCGAAGTAGAAGTGCAAAGCTCAGGGTTATTCAGAAGCATTAA 1251 0.454 MAMLSSKISSSLFLSLSPKLTYLTNAFLLSRSTATTTKQKNKKKENAKAALAKEKRRTRSDKQFNKDAVIERCNVNDTDTNSSHIPVMLGEVLDVFSTSSLTSFVDCTLGAAGHSTAVIRGHPELKCFVGMDVDSVAHDVAQPRLDAVLSSGVRAFTVLRNFRDVKSVLREVGEIQLGVDGILMDLGMSSMQVDDPTRGFSVLGDGPLDMRMDPQASLKAEDILNSWPDSEVGRILREYGEESNWRTLQKKIVDARLHGGLHSTSDLLDLIRHVTPPMKGGRQGWIKTATRVFQALRIAVNDELKTLEDSLHSCFDCLAPGGRLAVISFHSLEDRIVKQTFLDIIKGSEDVEERESLNSDLRKTSDEIKEKEAWIKQVIYGSKGTILTKRPITPSGEEEKLNRRSRSAKLRVIQKH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0643 416 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 84 415 IPR029063 -
Ssu5g0643 416 Pfam MraW methylase family 82 415 IPR002903 GO:0008168
Ssu5g0643 416 Hamap Ribosomal RNA small subunit methyltransferase H [rsmH]. 84 416 IPR002903 GO:0008168
Ssu5g0643 416 Gene3D Vaccinia Virus protein VP39 84 413 IPR029063 -
Ssu5g0643 416 Coils Coil 37 61 - -
Ssu5g0643 416 MobiDBLite consensus disorder prediction 391 416 - -
Ssu5g0643 416 PANTHER S-ADENOSYL-METHYLTRANSFERASE MRAW 57 415 IPR002903 GO:0008168
Ssu5g0643 416 TIGRFAM TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 81 415 IPR002903 GO:0008168
Ssu5g0643 416 MobiDBLite consensus disorder prediction 34 63 - -
Ssu5g0643 416 SUPERFAMILY Putative methyltransferase TM0872, insert domain 198 301 IPR023397 GO:0008168
Ssu5g0643 416 Gene3D Putative methyltransferase TM0872, insert domain 196 303 IPR023397 GO:0008168
Ssu5g0643 416 MobiDBLite consensus disorder prediction 38 63 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0643 K03438 - gmx:100787277 682.945