Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0638 ATGGCTCCTCCCAGAGGccgtggtggtagtggtggaggGTTCAGGGGTGGCAGGGGTGATAGAGGTAGAGGAAGGGGTGGtggaggaagaggaggagaCAGAGGTACACCATTCAAAGCTAGAGGTGGCAGCCATGGAGGAGGCAGAGGTGGTGGCCGCGGAGGAGGAAGAGGTGGCGGTCGTGGTGGTGGCAGAGGTGGAATGAAGGGTGGGAGCAGGGTTGTGGTCCAGCCTCACAGACATGAAGGTATTTTCATTGCCAAGGGGAAAGAAGATGCCCTTGTTACTAAGAATCTTGTTCCTGGTGAAGCTGTCTACAATGAGAAAAGGATTACTGTGCAGAATGAGGATGGTTCCAAAGATGAGTACAGGGTCTGGAACCCTTTCCGCTCAAAGTTGGCTGCTGCCATCCTTGGTGGAGTTGACAACATATGGATTAAACCTGGAGCCCGAGTCCTTTACCTAGGTGCTGCATCTGGCACAACAGTGTCTCATGTTTCGGACATTGTGGGCCCAACAGGAGTTGTCTATGCAGTAGAATTTTCTCACAGAAGTGGACGTGACTTGGTCAATATGGCAAAGAAGCGCACTAATGTTATACCCATTATTGAAGATGCTAGACATCCAGCTAAGTACAGGATGTTGGTTGGAATGGTTGATGTAATATTTTCTGATGTTGCCCAACCTGATCAGGCAAGGATTTTGGGGCTGAATGCTTCGTATTATCTCAAAGCGGGTGGTCATTTTGTTATTTCAATCAAGGCTAACTGCATAGACTCCACAGTCCCTGCCGAGGCGGTGTTTGAAAGTGAAGTCAACAGGTTGAAGGCAGATCAGTTTAAACCATTCGAGCAAGTCACCCTTGAACCATTTGAGCGGGACCATGCGTGTGTGGTTGGTGGATACAGAATGgccaagaagaaaaaagatgcTGCTGAGTAG 942 0.4618 MAPPRGRGGSGGGFRGGRGDRGRGRGGGGRGGDRGTPFKARGGSHGGGRGGGRGGGRGGGRGGGRGGMKGGSRVVVQPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDGSKDEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFESEVNRLKADQFKPFEQVTLEPFERDHACVVGGYRMAKKKKDAAE 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0638 313 Gene3D Vaccinia Virus protein VP39 127 304 IPR029063 -
Ssu5g0638 313 PRINTS Fibrillarin signature 94 113 IPR000692 GO:0003723|GO:0006364|GO:0008168
Ssu5g0638 313 PRINTS Fibrillarin signature 122 141 IPR000692 GO:0003723|GO:0006364|GO:0008168
Ssu5g0638 313 PRINTS Fibrillarin signature 174 191 IPR000692 GO:0003723|GO:0006364|GO:0008168
Ssu5g0638 313 PRINTS Fibrillarin signature 149 170 IPR000692 GO:0003723|GO:0006364|GO:0008168
Ssu5g0638 313 PRINTS Fibrillarin signature 229 258 IPR000692 GO:0003723|GO:0006364|GO:0008168
Ssu5g0638 313 PRINTS Fibrillarin signature 281 302 IPR000692 GO:0003723|GO:0006364|GO:0008168
Ssu5g0638 313 PRINTS Fibrillarin signature 199 228 IPR000692 GO:0003723|GO:0006364|GO:0008168
Ssu5g0638 313 Gene3D Phosphorylase Kinase; domain 1 71 126 - -
Ssu5g0638 313 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 74 300 IPR029063 -
Ssu5g0638 313 Pfam Fibrillarin 76 303 IPR000692 GO:0003723|GO:0006364|GO:0008168
Ssu5g0638 313 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 4 311 - -
Ssu5g0638 313 SMART Fibrillarin_2 76 304 IPR000692 GO:0003723|GO:0006364|GO:0008168
Ssu5g0638 313 MobiDBLite consensus disorder prediction 1 73 - -
Ssu5g0638 313 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 90 303 IPR000692 GO:0003723|GO:0006364|GO:0008168
Ssu5g0638 313 ProSitePatterns Fibrillarin signature. 174 188 IPR020813 GO:0003723|GO:0006364|GO:0008168
Ssu5g0638 313 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 4 311 - -
Ssu5g0638 313 PIRSF Nop17p 41 306 IPR000692 GO:0003723|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0638 Ssu-Chr5 14999119 15003013 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0638 K14563 - gmx:100789137 503.442