Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0628 ATGGAGGAGCAATTCATACTTAGAGTTCCACCTAATGTGGCGGAGCGGATAGAGCGTCTTCTGAATGAAAACAATTCTTCTTCATCTGAAGACAAGTCATTAGATTTGTCATTTAGTGAGGACGGAAGAAGCGGTACGTTTGTGATTGGGAATGAACACTTTCCAGCTTCTCTATTGGACCTTCCTTGCGTTGTTGAATCCTATAAGACTTATGATGATAACTCTTTGATTAAGACTGCCGATATTGGTCAGATGATTATGGTGCGGGAATCTGGTGATGCTGCTCCAGATGTAATTGAGTACAGACATGGCCTCACCCCGCCCATGAGAGATGCTCGCAAGCGTAGATTTCGCAGGGAACCTGATCTTAATcCTGAGCTTGTCTCCCGTGTTGAGAAAGATCTTCTCAAAATCATGGCTAGAGGAACAGCTGACAATCTTGATGTAGAAGCAGCTGAGCAAGAAGAAGGGGATGAGAATGCCCGAGGTGCTAATAAAAAACCTGCACCTAAGCCTGCACCAAAACATGATGCTCCAGAGAATCTTACTAATGCAGGGGAGCCTGACAGGAGTGATTCTGAGGAATCTGATGACTCAGTCTGA 603 0.4478 MEEQFILRVPPNVAERIERLLNENNSSSSEDKSLDLSFSEDGRSGTFVIGNEHFPASLLDLPCVVESYKTYDDNSLIKTADIGQMIMVRESGDAAPDVIEYRHGLTPPMRDARKRRFRREPDLNPELVSRVEKDLLKIMARGTADNLDVEAAEQEEGDENARGANKKPAPKPAPKHDAPENLTNAGEPDRSDSEESDDSV 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0628 200 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED 1 199 IPR037817 GO:0005669
Ssu5g0628 200 SMART TAFII55_N_2 1 146 IPR006751 GO:0005669|GO:0006367
Ssu5g0628 200 MobiDBLite consensus disorder prediction 147 200 - -
Ssu5g0628 200 CDD TAF7 2 156 IPR006751 GO:0005669|GO:0006367
Ssu5g0628 200 PANTHER TAF7 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR 1 199 - -
Ssu5g0628 200 MobiDBLite consensus disorder prediction 156 174 - -
Ssu5g0628 200 Pfam TAFII55 protein conserved region 1 140 IPR006751 GO:0005669|GO:0006367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0628 K03132 - gmx:100782843 321.627