Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0627 ATGAAGCTTAAAAGGTGGCTCACGAGTGTTTTGCTCCTCATTGTCGCCACAATAAGCAATGCAGCAGGTGCATTTGTGGGGGTAAACATTGGCACTGATGTTACTGATCTGCCATCTGCTTCAAATGTGGTTGCTATTCTAAAAGCACATCGAATTTCACACGTGCGTCTGTATAATGCCAATGAGCACATGCTACAAGCCCTTTCAAACACTGGCATTGAAGTGATTGTTGGTGTCACAGACGAAGAGATTCTAGGCATTGGAGAATCTGCATCAGTTGCTGCAACCTGGATTAGTAAGAATGTGGCTGCTTACATGCCATCCACTAACATCACAGCAATATCAGTTGGCAGTGAGGTTCTTACCTCAGTCCCAAATGTTGCACCTGTTCTTATTCTTGCCATGAACCATCTTCACAAAGCACTTGTTGCTTCAAACCTTGACTTCCGGGTTAAGGTCTCAACACCCCAGTCCATGGATATAATTTCTAGGCCTTTTCCTCCTTCTACAGCCACCTTTAACTCTTCATGGAACTCCACAATCTACCAACTCCTTCAGTTTTTGAAGAACACAAATTCCTCTTACATGTTAAATGCCTACCCTTACTATGGATACACTAAAGGAGATGGCATTTTCCCAATTGAATATGCTCTATTCAGACCCCTTTCTTCAGTGAAGCAAATTGTTGACCCAAACACTCTATTTCATTATAACAGCATGTTTGAGGCCATGGTGGATGCTAACTATTATGCTATAGAAGCCttcaatttcaataatataCCTATTGTTGTCACAGAAACTGGTTGGCCAAGTTTTGGTGGAGCAAACGAACCAGATGCTACTACAAAGAATGCTGAGGcctacaataataatttaattctgaGAGTACTCAATGGTTCAGGTCCCCCTAGTCAGCCAAAGATAGCCATTAACACCTAcctatatgaattatttaatgagGACAAGAGGAAAGGTCCTATATCAGAAAAGAATTGGGGTGCTTTTAATGCTAATGGAAGTAGTATTTATCCCTTGAGTTTTAGTGCTTCCAACCTGAGTAACGGAAATTCTCTAGGATCATTTTGTGTGGCTAAAGATGATGCAGACACTGATAAATTGCAAGCCGGCTTGAACTGGGCTTGTGGACAAGGCCAAGCTAACTGTGTAGCTATTCAACCAGGGAGACCATGCTATTCCCCCAATAACCTGAAAAGCCATGCCTCTTATgcttataatgattattatcaaaaaatgcATAGTGCTGGTGGAACATGTGACTTTGATGGTACAGCTACAACAACTACCGAGGATCCTAGTAAGTCCATGTGCCTTcttattttctgttttatttccAATCCTTATGGTATTACTTTTCTGACACTCCAAGTTATTTCTCTGTACTGTCAAACATACATAACCAAGGATTTAAATTGCGGTCACAGCCATAGTTGTAGAGTCCTAAAAACCTTAACATTGTGGAAAATTGAGGACAAATATGGACACAATTGCATACACAATGCAATTTGCCTTGATGTTGTAGTTTTAAGTGTGGTTTTTGACCTTTTGatttatagtgtgtttggattggtgaTACGAAATCATGGTGAGAGCAAAAtcatgatgaaaaatattattgcaCTGACATTAATAGGCTTGGATGCCATATCTGCTACCCTATTTGGTATGAATgacttttcatga 1701 0.3751 MKLKRWLTSVLLLIVATISNAAGAFVGVNIGTDVTDLPSASNVVAILKAHRISHVRLYNANEHMLQALSNTGIEVIVGVTDEEILGIGESASVAATWISKNVAAYMPSTNITAISVGSEVLTSVPNVAPVLILAMNHLHKALVASNLDFRVKVSTPQSMDIISRPFPPSTATFNSSWNSTIYQLLQFLKNTNSSYMLNAYPYYGYTKGDGIFPIEYALFRPLSSVKQIVDPNTLFHYNSMFEAMVDANYYAIEAFNFNNIPIVVTETGWPSFGGANEPDATTKNAEAYNNNLILRVLNGSGPPSQPKIAINTYLYELFNEDKRKGPISEKNWGAFNANGSSIYPLSFSASNLSNGNSLGSFCVAKDDADTDKLQAGLNWACGQGQANCVAIQPGRPCYSPNNLKSHASYAYNDYYQKMHSAGGTCDFDGTATTTTEDPSKSMCLLIFCFISNPYGITFLTLQVISLYCQTYITKDLNCGHSHSCRVLKTLTLWKIEDKYGHNCIHNAICLDVVVLSVVFDLLIYSVFGLVIRNHGESKIMMKNIIALTLIGLDAISATLFGMNDFS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0627 566 ProSitePatterns Glycosyl hydrolases family 17 signature. 260 273 IPR000490 GO:0004553|GO:0005975
Ssu5g0627 566 Gene3D - 356 452 - -
Ssu5g0627 566 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 2 450 IPR044965 GO:0004553|GO:0005975
Ssu5g0627 566 Pfam Glycosyl hydrolases family 17 26 347 IPR000490 GO:0004553|GO:0005975
Ssu5g0627 566 PANTHER O-GLYCOSYL HYDROLASE FAMILY 17 PROTEIN 2 450 - -
Ssu5g0627 566 SUPERFAMILY (Trans)glycosidases 26 346 IPR017853 -
Ssu5g0627 566 SMART X8_cls 360 445 IPR012946 -
Ssu5g0627 566 Gene3D Glycosidases 25 354 - -
Ssu5g0627 566 Pfam X8 domain 361 432 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0627 Ssu-Chr5 14786305 14788266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0627 1 443 Glycoside Hydrolase AT3G13560 67.265 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0627 K19892 - gmx:100779131 816.224