Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0618 ATGAAGCcacaatcatcatccttgaaTCCATATGCAGCTTCATATATTCCTCTCTCTAAAAGGGGGACAGATGGTAGAACATCTTTGACAGAAAAAGATTCCAAGAGCTATGATGGGACCGTTTGGTTTCAGACTCATCAGGATGCCACAAATGATCAGCATCTTATCAACTTTAGCTCAGAAAGGCTCTCAAAACCCGAAGCTTTTCTGGCAAAAAGCCAGCCTGCTTCTAGTTCTTACACTTCATCATCACAGAATGTGGCAGACTTGACAGATAATCAGTTGCTAGATGAAGAGCTTGATATGGATTTGGAATATCTTAGGATGGCATTTCCTGGTATATCTTATCAGTCCCTTGTAGATGTCTATAATGTAAACAGTGGTGACTTGGATGCTGCTATTGACATGCTCAGCCAACTTGAGTTAGAGGGAGATGAATCTTCTGGAAGTCTTCCAGAGACACTGGATATTGGTGATGTTTCAGAATCTGGATTGCCAGCTGATTCTGCTTCATTAAAACAGAAGAATGTAGCAGAGGAAACCGGTACTTCATCTAGTCACATGTCATCAACCAATGTCTTGTGA 585 0.4 MKPQSSSLNPYAASYIPLSKRGTDGRTSLTEKDSKSYDGTVWFQTHQDATNDQHLINFSSERLSKPEAFLAKSQPASSSYTSSSQNVADLTDNQLLDEELDMDLEYLRMAFPGISYQSLVDVYNVNSGDLDAAIDMLSQLELEGDESSGSLPETLDIGDVSESGLPADSASLKQKNVAEETGTSSSHMSSTNVL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0618 194 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6 1 187 - -
Ssu5g0618 194 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6 1 187 IPR038981 -
Ssu5g0618 194 Gene3D - 82 149 - -
Ssu5g0618 194 ProSiteProfiles CUE domain profile. 99 142 IPR003892 GO:0043130
Ssu5g0618 194 MobiDBLite consensus disorder prediction 167 194 - -
Ssu5g0618 194 MobiDBLite consensus disorder prediction 1 34 - -
Ssu5g0618 194 MobiDBLite consensus disorder prediction 144 194 - -
Ssu5g0618 194 CDD CUE_CID7_like 101 143 IPR041806 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0618 Ssu-Chr5 14216561 14218049 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0618 - - gmx:100781938 310.842