Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0612 ATGGCTTCCATGAATTTATTCACCACCATTCCCCTCGCTGCCGACGGCCGGATTCCGACCATCTATTTTCCCCGGCGGCGACCCAACTCAGTCCCTGTCGCCGCCACTTCGCCGGAATCTCCTCCCGAAATAGAGCTCGAATTCATCGGGTCCAAGGCGGAAAGTGATGGGTCGTACCCGGTGGAGAAAGCAAAAGCAATAAGCGGAGAGAAGCTGTTGAGGAACATCATGCTGGATAACAAGATCGAGCTTTATGCCACCTATGGGAAGCTGATGAACTGCGGGGGAGGTGGTAGCTGTGGAACTTGCATAGTAGAGATTATTGAAGGAAAGGATcttttaaatgaaagaacaaaTACTGAAGTCAGATATCTTAAGAAGAAACCCGAATCATGGAGACTGGCTTGTCAAACTATTGTTGGAAACAAAGAAAACTCTGGCAAGGTATCAGTAGCATATCTTTTCCTTTATGAAGTCTATAATGGGACCCTCAATGATGAAGACAATTATAGCATGTAG 519 0.4566 MASMNLFTTIPLAADGRIPTIYFPRRRPNSVPVAATSPESPPEIELEFIGSKAESDGSYPVEKAKAISGEKLLRNIMLDNKIELYATYGKLMNCGGGGSCGTCIVEIIEGKDLLNERTNTEVRYLKKKPESWRLACQTIVGNKENSGKVSVAYLFLYEVYNGTLNDEDNYSM 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0612 172 Gene3D - 54 154 IPR012675 -
Ssu5g0612 172 Pfam 2Fe-2S iron-sulfur cluster binding domain 91 140 IPR001041 GO:0051536
Ssu5g0612 172 PANTHER FERREDOXIN/ADRENODOXIN 34 151 IPR001055 GO:0051537|GO:0140647
Ssu5g0612 172 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 3, CHLOROPLASTIC 34 151 - -
Ssu5g0612 172 SUPERFAMILY 2Fe-2S ferredoxin-like 67 141 IPR036010 GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0612 Ssu-Chr5 14118592 14121470 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0612 - - gmx:100807125 259.996